RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SPPL2AQ8TCT8 520 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 RNF138Q8WVD3 245 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 HGDQ93099 445 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 NUF2Q9BZD4 464 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 ZDHHC11Q9H8X9 412 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 FOLH1BQ9HBA9 442 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 TAS2R9Q9NYW1 312 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 NOP53Q9NZM5 478 aaKnown RBP11.93□□□□□ -0.5
VPS28-216ENST00000533806 SH3BP4Q9P0V3 963 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 PTPN13Q12923 2485 aa11.93□□□□□ -0.5
VPS28-216ENST00000533806 ESPL1Q14674 2120 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 CAPN14A8MX76 684 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 HMGB1P1B2RPK0 211 aaPredicted RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 NPIPA5E9PKD4 350 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 G3V3Y1 287 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 SDHDO14521 159 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 HDAC3O15379 428 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 TRIM3O75382 744 aaPredicted RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 PPM1BO75688 479 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 ZIC2O95409 532 aaPredicted RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 P04436 131 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 PRPS1L1P21108 318 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 RPL3P39023 403 aaKnown RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 DNASE1L1P49184 302 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 NRG3P56975 720 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 PSPHP78330 225 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 NNATQ16517 81 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 EXOSC6Q5RKV6 272 aaKnown RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 FNDC7Q5VTL7 733 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 DESI1Q6ICB0 168 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 GFRALQ6UXV0 394 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 Q6ZPB1 254 aaPredicted RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 GK5Q6ZS86 529 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 MAVSQ7Z434 540 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 WDR75Q8IWA0 830 aaKnown RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 PRR22Q8IZ63 422 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 OR52N2Q8NGI0 321 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 PSMA8Q8TAA3 256 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 RELTQ969Z4 430 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 ZBED6CLQ96FA7 236 aaPredicted RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 MAELQ96JY0 434 aaKnown RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 PPP1R36Q96LQ0 422 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 ANGPTL4Q9BY76 406 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 TTTY12Q9BZ98 90 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 TSPAN10Q9H1Z9 355 aaPredicted RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 IL1RL2Q9HB29 575 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 SIRT3Q9NTG7 399 aaPredicted RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 TUBA8Q9NY65 449 aaPredicted RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 NPIPA1Q9UND3 350 aa11.92□□□□□ -0.5
VPS28-216ENST00000533806 EIF3LQ9Y262 564 aaKnown RBP11.92□□□□□ -0.5
VPS28-216ENST00000533806 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 LRRC3CA6NJW4 275 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 SLCO1B7G3V0H7 640 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 HS6ST1O60243 411 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 TSPAN2O60636 221 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 COQ9O75208 318 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 ERN1O75460 977 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 ALDOCP09972 364 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 LBPP18428 481 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 HPCAL1P37235 193 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 PTGDSP41222 190 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 CASP3P42574 277 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 TMED10P49755 219 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 CDK9P50750 372 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 PPIAP62937 165 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 HSPB3Q12988 150 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 ELOAQ14241 798 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 RGS9BPQ6ZS82 235 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 FAM47EQ6ZV65 393 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 NUP54Q7Z3B4 507 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 SLC34A3Q8N130 599 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 TMEM251Q8N6I4 163 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 NATD1Q8N6N6 113 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 FAM13CQ8NE31 585 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 OMA1Q96E52 524 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 GIMAP5Q96F15 307 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 SLC35A4Q96G79 324 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 LMF2Q9BU23 707 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 DDX18Q9NVP1 670 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 ERRFI1Q9UJM3 462 aaPredicted RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 OSGIN2Q9Y236 505 aa11.91□□□□□ -0.5
VPS28-216ENST00000533806 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.91□□□□□ -0.5
VPS28-216ENST00000533806 OR6C70A6NIJ9 312 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 ADAM10O14672 748 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 TP53I11O14683 189 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 TFECO14948 347 aaPredicted RBP11.9□□□□□ -0.5
VPS28-216ENST00000533806 SCN2BO60939 215 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 UGT2B11O75310 529 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 SNX4O95219 450 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 LDLRP01130 860 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 IGHG3P01860 377 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 RFPL3SP0C7P2 107 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 RNF224P0DH78 156 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 EPHA3P29320 983 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 MANFP55145 182 aaKnown RBP11.9□□□□□ -0.5
VPS28-216ENST00000533806 WNT3P56703 355 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 SPTAN1Q13813 2472 aaKnown RBP11.9□□□□□ -0.5
VPS28-216ENST00000533806 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.9□□□□□ -0.5
VPS28-216ENST00000533806 C4orf17Q53FE4 359 aa11.9□□□□□ -0.5
VPS28-216ENST00000533806 TBCELQ5QJ74 424 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms