RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SLC9A3P48764 834 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 CLCNKAP51800 687 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 HTRA4P83105 476 aaPredicted RBP18.12■□□□□ 0.49
VPS28-213ENST00000530983 SLAMF1Q13291 335 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 LASP1Q14847 261 aaKnown RBP18.12■□□□□ 0.49
VPS28-213ENST00000530983 RTL10Q7L3V2 364 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 OR8D4Q8NGM9 314 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 SUN3Q8TAQ9 357 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 GATAD2BQ8WXI9 593 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 SLC9A6Q92581 669 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 DIRAS2Q96HU8 199 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 KCTD7Q96MP8 289 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 TM9SF2Q99805 663 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 PRR14Q9BWN1 585 aa18.12■□□□□ 0.49
VPS28-213ENST00000530983 ANTXRLA6NF34 631 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 FABP12A6NFH5 140 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 C4orf51C9J302 202 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 CLEC3AO75596 197 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 SLC35G4P0C7Q5 338 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 GSTM3P21266 225 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 HOXD11P31277 338 aaPredicted RBP18.11■□□□□ 0.49
VPS28-213ENST00000530983 TAS2R38P59533 333 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 TPBGQ13641 420 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 GAB4Q2WGN9 574 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 ZNF750Q32MQ0 723 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 SNAP47Q5SQN1 464 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 MRGPREQ86SM8 312 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 TTYH2Q9BSA4 534 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 MED18Q9BUE0 208 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 KATNB1Q9BVA0 655 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 SAP130Q9H0E3 1048 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 TMEM245Q9H330 911 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 ZDHHC4Q9NPG8 344 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.11■□□□□ 0.49
VPS28-213ENST00000530983 SEC14L5O43304 696 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 ERAL1O75616 437 aaKnown RBP18.11■□□□□ 0.49
VPS28-213ENST00000530983 NTSP30990 170 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 UBE3AQ05086 875 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 DUSP2Q05923 314 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 KIAA1161Q6NSJ0 714 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 SLC27A4Q6P1M0 643 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 SLC36A4Q6YBV0 504 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 TMEM64Q6YI46 380 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 HSDL2Q6YN16 418 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 QSOX2Q6ZRP7 698 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 SIMC1Q8NDZ2 872 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 C1GALT1C1Q96EU7 318 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 BBS4Q96RK4 519 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 MACROD1Q9BQ69 325 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 SLC22A4Q9H015 551 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 KCNE3Q9Y6H6 103 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 MAU2Q9Y6X3 613 aa18.11■□□□□ 0.49
VPS28-213ENST00000530983 CDH23Q9H251 3354 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 SNRNP200O75643 2136 aaKnown RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 PGRMC2O15173 223 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 CASC3O15234 703 aaKnown RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 FHP07954 510 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 CD79BP40259 229 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 MTNR1AP48039 350 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 GALK2Q01415 458 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 DDI2Q5TDH0 399 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 TEX47Q8TBZ9 253 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 CNRIP1Q96F85 164 aaPredicted RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 GDF15Q99988 308 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 C11orf54Q9H0W9 315 aaPredicted RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 PAQR5Q9NXK6 330 aaPredicted RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 TMCC2O75069 709 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 UBXN7O94888 489 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 NTN1O95631 604 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 LIMS3P0CW19 117 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 LIMS4P0CW20 117 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 RPS5P46782 204 aaKnown RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 DAB2P98082 770 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 FABP5Q01469 135 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 PRDX1Q06830 199 aaKnown RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 MLF2Q15773 248 aaPredicted RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 DUSP6Q16828 381 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 MINDY4Q4G0A6 757 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 CRTC2Q53ET0 693 aaPredicted RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 SHFQ7M4L6 423 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 FAM20CQ8IXL6 584 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 GDPD1Q8N9F7 314 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 OR2A1Q8NGT9 310 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 POF1BQ8WVV4 589 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 C16orf58Q96GQ5 468 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 FAIM2Q9BWQ8 316 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 PINK1Q9BXM7 581 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 XKR8Q9H6D3 395 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 TOR4AQ9NXH8 423 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 DEC1Q9P2X7 70 aa18.1■□□□□ 0.49
VPS28-213ENST00000530983 MRPS23Q9Y3D9 190 aaKnown RBP18.1■□□□□ 0.49
VPS28-213ENST00000530983 A0A0G2JPF8 293 aa18.09■□□□□ 0.49
VPS28-213ENST00000530983 A0A1W2PS29 197 aa18.09■□□□□ 0.49
VPS28-213ENST00000530983 IGLON5A6NGN9 336 aa18.09■□□□□ 0.49
VPS28-213ENST00000530983 HNRNPCL2B2RXH8 293 aa18.09■□□□□ 0.49
VPS28-213ENST00000530983 HNRNPCL3B7ZW38 293 aa18.09■□□□□ 0.49
VPS28-213ENST00000530983 SLC30A4O14863 429 aa18.09■□□□□ 0.49
VPS28-213ENST00000530983 POLR1CO15160 346 aaPredicted RBP18.09■□□□□ 0.49
VPS28-213ENST00000530983 HNRNPCL4P0DMR1 293 aa18.09■□□□□ 0.49
VPS28-213ENST00000530983 MAP4K2Q12851 820 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms