RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NUP43Q8NFH3 380 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 SETD6Q8TBK2 473 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 CHAC2Q8WUX2 184 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 EFHD2Q96C19 240 aaPredicted RBP19.96■□□□□ 0.79
VPS28-205ENST00000526204 TMCO6Q96DC7 493 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 ELP4Q96EB1 424 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 SLC38A2Q96QD8 506 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 MTIF3Q9H2K0 278 aaKnown RBP19.96■□□□□ 0.79
VPS28-205ENST00000526204 TRIM45Q9H8W5 580 aaPredicted RBP19.96■□□□□ 0.79
VPS28-205ENST00000526204 SNTG1Q9NSN8 517 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 LYARQ9NX58 379 aaKnown RBP19.96■□□□□ 0.79
VPS28-205ENST00000526204 MOSPD1Q9UJG1 213 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 PLEKHM1Q9Y4G2 1056 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 ZNF780BQ9Y6R6 833 aa19.96■□□□□ 0.79
VPS28-205ENST00000526204 PRODHO43272 600 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 IL1AP01583 271 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 C8orf89P0DMQ9 161 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 NR2F6P10588 404 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 ACP2P11117 423 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 HOXB3P14651 431 aaPredicted RBP19.95■□□□□ 0.78
VPS28-205ENST00000526204 SPNP16150 400 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 CERS1P27544 350 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 DUSP2Q05923 314 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 TSPAN31Q12999 210 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 PPP2R2DQ66LE6 453 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 PAQR6Q6TCH4 344 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 CACTIN-AS1Q8N1I8 211 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 CHFRQ96EP1 664 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 ARHGDIGQ99819 225 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 SLC17A9Q9BYT1 436 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 SLC38A1Q9H2H9 487 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 FGF20Q9NP95 211 aaPredicted RBP19.95■□□□□ 0.78
VPS28-205ENST00000526204 ISYNA1Q9NPH2 558 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 COLEC10Q9Y6Z7 277 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 NUMA1Q14980 2115 aa19.95■□□□□ 0.78
VPS28-205ENST00000526204 SLC35F4A4IF30 521 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 STK25O00506 426 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 ETV5P41161 510 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 ETV1P50549 477 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 WNT4P56705 351 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 ST3GAL3Q11203 375 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 DUSP6Q16828 381 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 ZNF425Q6IV72 752 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 TMPRSS11AQ6ZMR5 421 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 HMGN2P46Q86SG4 172 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 KIF18BQ86Y91 864 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 ABHD8Q96I13 439 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 SAP130Q9H0E3 1048 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 KIR3DX1Q9H7L2 352 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 CTPS2Q9NRF8 586 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 ERVK13-1Q9NX77 482 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 KCNE3Q9Y6H6 103 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 TMEM129A0AVI4 362 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 WWP2O00308 870 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 EIF2S1P05198 315 aaKnown RBP19.94■□□□□ 0.78
VPS28-205ENST00000526204 ASGR2P07307 311 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 MAGP20916 626 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 PTGER1P34995 402 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 LSM11P83369 360 aaKnown RBP eCLIP19.94■□□□□ 0.78
VPS28-205ENST00000526204 RASSF6Q6ZTQ3 369 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 RRM2BQ7LG56 351 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 LAPTM4BQ86VI4 370 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 CLDN22Q8N7P3 220 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 GANCQ8TET4 914 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 TRMT61AQ96FX7 289 aaKnown RBP19.94■□□□□ 0.78
VPS28-205ENST00000526204 ZNF681Q96N22 645 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 NELL2Q99435 816 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 TRMT61BQ9BVS5 477 aaKnown RBP19.94■□□□□ 0.78
VPS28-205ENST00000526204 MIR1-1HGQ9H1L0 117 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 KLHL28Q9NXS3 571 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 SPHK1Q9NYA1 384 aa19.94■□□□□ 0.78
VPS28-205ENST00000526204 NINQ8N4C6 2090 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 A0A1W2PQU0 124 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 GSAPA4D1B5 854 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 FAM170BA6NMN3 283 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 TSPAN19P0C672 248 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 PEBP1P30086 187 aaKnown RBP19.93■□□□□ 0.78
VPS28-205ENST00000526204 MC3RP41968 323 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 RAB8AP61006 207 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 ATAT1Q5SQI0 421 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 ZNF730Q6ZMV8 503 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 NRROSQ86YC3 692 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 OR8H2Q8N162 312 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 SLC25A46Q96AG3 418 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 APOOQ9BUR5 198 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 ACTRT3Q9BYD9 372 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 PLA2G12AQ9BZM1 189 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 QRSL1Q9H0R6 528 aaKnown RBP19.93■□□□□ 0.78
VPS28-205ENST00000526204 EGLN3Q9H6Z9 239 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 TXNL4BQ9NX01 149 aaKnown RBP19.93■□□□□ 0.78
VPS28-205ENST00000526204 APOBEC3BQ9UH17 382 aaKnown RBP19.93■□□□□ 0.78
VPS28-205ENST00000526204 HEATR5BQ9P2D3 2071 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 PRR23AA6NEV1 266 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 DUXAA6NLW8 204 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 UBXN7O94888 489 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 PRKAR1BP31321 381 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 PSPHP78330 225 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 CHRNEQ04844 493 aa19.93■□□□□ 0.78
VPS28-205ENST00000526204 LARS2Q15031 903 aaKnown RBP19.93■□□□□ 0.78
VPS28-205ENST00000526204 MINDY4Q4G0A6 757 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms