RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 ZNF551Q7Z340 670 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 NUP54Q7Z3B4 507 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 MDGA2Q7Z553 956 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 CAMKMTQ7Z624 323 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 PACS2Q86VP3 889 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 SULF2Q8IWU5 870 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 PRR22Q8IZ63 422 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 SLC34A3Q8N130 599 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 EID3Q8N140 333 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 GHDCQ8N2G8 530 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 MIER2Q8N344 545 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 OR2L13Q8N349 312 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 FBXW8Q8N3Y1 598 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 KRTCAP2Q8N6L1 136 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 TRIML2Q8N7C3 387 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 AMER2Q8N7J2 671 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 ZNF441Q8N8Z8 693 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 CDRT4Q8N9R6 151 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 GLB1L3Q8NCI6 653 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 ST6GALNAC3Q8NDV1 305 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 NUP43Q8NFH3 380 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 OR2M7Q8NG81 312 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 OR7G2Q8NG99 324 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 OR7A2PQ8NGA2 310 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 OR10G3Q8NGC4 313 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 OR56A1Q8NGH5 318 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 SFXN5Q8TD22 340 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 ACTRT2Q8TDY3 377 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 PAQR8Q8TEZ7 354 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 CKAP2Q8WWK9 683 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 ADIPOR1Q96A54 375 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 TESCQ96BS2 214 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 OMA1Q96E52 524 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 JSRP1Q96MG2 331 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 VSTM2LQ96N03 204 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 COL21A1Q96P44 957 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 SLX1AQ9BQ83 275 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 SIKE1Q9BRV8 207 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 HES7Q9BYE0 225 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 NXF5Q9H1B4 397 aaKnown RBP4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 CLMPQ9H6B4 373 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 WDR55Q9H6Y2 383 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 EXO5Q9H790 373 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 RMND5AQ9H871 391 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 HHATLQ9HCP6 504 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 TCF7L2Q9NQB0 619 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 ZCCHC3Q9NUD5 404 aaKnown RBP4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 AIG1Q9NVV5 245 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 ZNF446Q9NWS9 450 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 FAM120CQ9NX05 1096 aaKnown RBP4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 KLRF1Q9NZS2 232 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 TRIM33Q9UPN9 1127 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 EXO1Q9UQ84 846 aaKnown RBP4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 PCDHGB3Q9Y5G1 929 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 USH1CQ9Y6N9 552 aa4.98□□□□□ -1.61
HMGB1P40-201ENST00000525121 IGSF10Q6WRI0 2623 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 RNF103-CHMP3A0A140T963 221 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 ANKRD33BA6NCL7 494 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 PRAMEF25A6NGN4 478 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 OR6C70A6NIJ9 312 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 FAM166BA8MTA8 275 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 NPIPA5E9PKD4 350 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 G3V3Y1 287 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 PYCARD-AS1I3L0S3 204 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 UPK1AO00322 258 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 RNASET2O00584 256 aaKnown RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 TO15178 435 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 CDC40O60508 579 aaKnown RBP eCLIP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 SLC22A3O75751 556 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 AGFG2O95081 481 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 UNC5CO95185 931 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 ANP32DO95626 131 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 C6orf47O95873 294 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 IL6P05231 212 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 VIMP08670 466 aaKnown RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 CCL3P10147 92 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 LAMP1P11279 417 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 HPGDP15428 266 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 ABOP16442 354 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 EFNA1P20827 205 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 ATP6V1C1P21283 382 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 GNLYP22749 145 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 ELAVL4P26378 380 aaKnown RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 GDF1P27539 372 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 GABRA3P34903 492 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 CHI3L1P36222 383 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 PIGAP37287 484 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 FRKP42685 505 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 RFX3P48380 749 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 CCT3P49368 545 aaKnown RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 CDK9P50750 372 aaKnown RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 AQP5P55064 265 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 NME5P56597 212 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 CORO7P57737 925 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 FBXW4P57775 412 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 PPIAP62937 165 aaKnown RBP4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 SNTA1Q13424 505 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 TOMM20Q15388 145 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 FAM174BQ3ZCQ3 159 aa4.97□□□□□ -1.61
HMGB1P40-201ENST00000525121 SLC9B1Q4ZJI4 515 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms