RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 NDUFA5Q16718 116 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 SHROOM1Q2M3G4 852 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CCDC153Q494R4 210 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CFAP157Q5JU67 520 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 MPP7Q5T2T1 576 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 ATP1A1-AS1Q5TC04 95 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 SNRNP48Q6IEG0 339 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 RFWD3Q6PCD5 774 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 C16orf87Q6PH81 154 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 FRRS1Q6ZNA5 592 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 LRRC74BQ6ZQY2 392 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 STXBP4Q6ZWJ1 553 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 OTUD6AQ7L8S5 288 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 SPATA24Q86W54 205 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CATSPERDQ86XM0 798 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 MEX3DQ86XN8 651 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 KRTAP7-1Q8IUC3 87 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 OR8H3Q8N146 312 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 RIBC1Q8N443 379 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 ARL10Q8N8L6 244 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 KIAA0895Q8NCT3 520 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 ZNF519Q8TB69 540 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 TBCKQ8TEA7 893 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 C10orf82Q8WW14 230 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 GTF3AQ92664 365 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CORO2AQ92828 525 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 MR1Q95460 341 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 DYNLL2Q96FJ2 89 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 BSCL2Q96G97 398 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CNOT6LQ96LI5 555 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 C2orf48Q96LS8 159 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 OLFM3Q96PB7 478 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 TSSK2Q96PF2 358 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 NAP1L3Q99457 506 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 TSG101Q99816 390 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 PRMT1Q99873 361 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 DDX50Q9BQ39 737 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 OVOL2Q9BRP0 275 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 TRIM15Q9C019 465 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 COA1Q9GZY4 146 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 UPF3AQ9H1J1 476 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 DEFB129Q9H1M3 183 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 TPK1Q9H3S4 243 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 MINDY3Q9H8M7 445 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 RPF1Q9H9Y2 349 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 SPHK2Q9NRA0 654 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 PHPT1Q9NRX4 125 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 RHBDL2Q9NX52 303 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 TEX10Q9NXF1 929 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 NDE1Q9NXR1 346 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 HACD3Q9P035 362 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 NYAP2Q9P242 653 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 LEF1Q9UJU2 399 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CDH7Q9ULB5 785 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 PLA2G4CQ9UP65 541 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CHMP2BQ9UQN3 213 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 TRAF3IP3Q9Y228 551 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 ATP6V0A2Q9Y487 856 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 KLK4Q9Y5K2 254 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CDK5RAP2Q96SN8 1893 aa2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 RBBP6Q7Z6E9 1792 aaKnown RBP2.79□□□□□ -1.96
HMGB1P41-201ENST00000520234 CROCCQ5TZA2 2017 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 PFASO15067 1338 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 TAF1LQ8IZX4 1826 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 LOC105371267A0A1B0GV96 52 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 TRIM64A6NGJ6 449 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 CCDC169A6NNP5 214 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 YDJCA8MPS7 323 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 PP2D1A8MPX8 630 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 A8MVM7 634 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 TCP11X1B4DZS4 312 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 PRSS46E5RG02 174 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 FBP2O00757 339 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 PDXKO00764 312 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 CASQ2O14958 399 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 ZBTB5O15062 677 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 ALOX15BO15296 676 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 DENRO43583 198 aaKnown RBP2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 PFDN1O60925 122 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 SAP30O75446 220 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 PALMO75781 387 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 PSMG1O95456 288 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 DUS4LO95620 317 aaKnown RBP2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 OXSR1O95747 527 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 IL1BP01584 269 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 ETS2P15036 469 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 LBPP18428 481 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 IVDP26440 423 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 RPA1P27694 616 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 PTPN4P29074 926 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 SSTR1P30872 391 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 BTDP43251 543 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 MTIF2P46199 727 aaKnown RBP2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 RPL5P46777 297 aaKnown RBP2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 ALDH3B2P48448 385 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 NAPAP54920 295 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 SLC12A3P55017 1021 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 TNNC1P63316 161 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 ASIC1P78348 528 aa2.78□□□□□ -1.96
HMGB1P41-201ENST00000520234 XIAPP98170 497 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms