RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 CCND2P30279 289 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 CTNNB1P35222 781 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 IER3P46695 156 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 KCNJ1P48048 391 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 RPL34P49207 117 aaKnown RBP4.21□□□□□ -1.74
SF3B1-212ENST00000496458 BEX3Q00994 111 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 ELP6Q0PNE2 266 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 RIPK1Q13546 671 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 PCK2Q16822 640 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 AARDQ4LEZ3 155 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 HSP90B2PQ58FF3 399 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 FHL5Q5TD97 284 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 CENPPQ6IPU0 288 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 ZNF730Q6ZMV8 503 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 CACUL1Q86Y37 369 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 CLEC1AQ8NC01 280 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 FAM210AQ96ND0 272 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 C17orf62Q9BQA9 187 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 TBCDQ9BTW9 1192 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 ZNF665Q9H7R5 613 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 MRPL17Q9NRX2 175 aaKnown RBP4.21□□□□□ -1.74
SF3B1-212ENST00000496458 SLCO1C1Q9NYB5 712 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 TMOD2Q9NZR1 351 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 CCPG1Q9ULG6 757 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 CELA1Q9UNI1 258 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 PIK3R4Q99570 1358 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 RNF17Q9BXT8 1623 aaKnown RBP4.21□□□□□ -1.74
SF3B1-212ENST00000496458 EIF2AK4Q9P2K8 1649 aaKnown RBP4.21□□□□□ -1.74
SF3B1-212ENST00000496458 KDM5DQ9BY66 1539 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 RAD50Q92878 1312 aa4.21□□□□□ -1.74
SF3B1-212ENST00000496458 MROH2AA6NES4 1674 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 NUP155O75694 1391 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 NEDD8-MDP1E9PL57 170 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 M0R296 226 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 SPAG6O75602 509 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 KBTBD11O94819 623 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 KIAA0754O94854 1291 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 PDGFBP01127 241 aaPredicted RBP4.2□□□□□ -1.74
SF3B1-212ENST00000496458 OR9G9P0C7N8 305 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 CCDC172P0C7W6 258 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 CCDC192P0DO97 292 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 ID1P41134 155 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 MTIF2P46199 727 aaKnown RBP4.2□□□□□ -1.74
SF3B1-212ENST00000496458 ATP5OP48047 213 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 PITPNBP48739 271 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 FHITP49789 147 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 SLC22A6Q4U2R8 563 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 PRR30Q53SZ7 412 aaPredicted RBP4.2□□□□□ -1.74
SF3B1-212ENST00000496458 LINC00242Q5T6M2 205 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 TPGS2Q68CL5 300 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 KRTAP5-4Q6L8H1 288 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 RFWD3Q6PCD5 774 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 SIGLEC15Q6ZMC9 328 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 KDM8Q8N371 416 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 MNS1Q8NEH6 495 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 OR56B2PQ8NGI1 322 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 GSDMAQ96QA5 445 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 ERGIC2Q96RQ1 377 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 ERP44Q9BS26 406 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 IDI2Q9BXS1 227 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 COQ10BQ9H8M1 238 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 ABCB10Q9NRK6 738 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 DNAJC11Q9NVH1 559 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 SOHLH2Q9NX45 425 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.2□□□□□ -1.742e-9■□□□□ 8.5
SF3B1-212ENST00000496458 ARMCX1Q9P291 453 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 CLIP2Q9UDT6 1046 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 STRAPQ9Y3F4 350 aaKnown RBP4.2□□□□□ -1.74
SF3B1-212ENST00000496458 ASB3Q9Y575 518 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 MROH1Q8NDA8 1641 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 ABCC3O15438 1527 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 NAIPQ13075 1403 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 UHRF1BP1Q6BDS2 1440 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 ACEP12821 1306 aa4.2□□□□□ -1.74
SF3B1-212ENST00000496458 PREX1Q8TCU6 1659 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 TNRQ92752 1358 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 SDR42E2A6NKP2 422 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 FOXI3A8MTJ6 420 aaPredicted RBP4.19□□□□□ -1.74
SF3B1-212ENST00000496458 DIRAS3O95661 229 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 PTBP3O95758 552 aaKnown RBP4.19□□□□□ -1.74
SF3B1-212ENST00000496458 ABHD2P08910 425 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 NEFHP12036 1026 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 SKILP12757 684 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 PPP2R1AP30153 589 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 PPIAP62937 165 aaKnown RBP4.19□□□□□ -1.74
SF3B1-212ENST00000496458 GFPT1Q06210 699 aaPredicted RBP4.19□□□□□ -1.74
SF3B1-212ENST00000496458 GABPB1Q06547 395 aaPredicted RBP4.19□□□□□ -1.74
SF3B1-212ENST00000496458 SLC3A1Q07837 685 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 CHIT1Q13231 466 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 TIMM50Q3ZCQ8 353 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 IQCCQ4KMZ1 466 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 CAVIN4Q5BKX8 364 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 RIPPLY2Q5TAB7 128 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 REP15Q6BDI9 236 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 PODNL1Q6PEZ8 512 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 ZYG11AQ6WRX3 759 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 C1orf186Q6ZWK4 172 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 TAF8Q7Z7C8 310 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 UNC5CLQ8IV45 518 aa4.19□□□□□ -1.74
SF3B1-212ENST00000496458 C11orf42Q8N5U0 333 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms