RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 STARD6P59095 220 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 TAS2R41P59536 307 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 ARF3P61204 181 aaPredicted RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 RPP38P78345 283 aaKnown RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 ST3GAL3Q11203 375 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 CDK5R2Q13319 367 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 BIKQ13323 160 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 COL9A2Q14055 689 aaPredicted RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 GANABQ14697 944 aaKnown RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 RAB39AQ14964 217 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 C16orf72Q14CZ0 275 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 MAD2L1BPQ15013 274 aaPredicted RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 CCDC85BQ15834 202 aaPredicted RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 MEP1AQ16819 746 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 FAM214AQ32MH5 1076 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 ZNF311Q5JNZ3 666 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 TCTE1Q5JU00 501 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 TPRG1LQ5T0D9 272 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 GARNL3Q5VVW2 1013 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 C18orf63Q68DL7 685 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 FCRL6Q6DN72 434 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 FIGNL1Q6PIW4 674 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 CASP12Q6UXS9 341 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 RANBP3LQ86VV4 465 aaPredicted RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 FAM20CQ8IXL6 584 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 CARFQ8N187 725 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 SPEM1Q8N4L4 309 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 AQP11Q8NBQ7 271 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 KCT2Q8NC54 265 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 TOR1AIP2Q8NFQ8 470 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 OR6C4Q8NGE1 309 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 OR5D16Q8NGK9 328 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 OR4C15Q8NGM1 316 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 OR9A2Q8NGT5 310 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 OR52J3Q8NH60 311 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 C9orf43Q8TAL5 461 aaPredicted RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 PMM1Q92871 262 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 SLC38A4Q969I6 547 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 ISOC1Q96CN7 298 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 ELP4Q96EB1 424 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 DTNBP1Q96EV8 351 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 CNRIP1Q96F85 164 aaPredicted RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 ZDHHC12Q96GR4 267 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 TCTN2Q96GX1 697 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 OR2A5Q96R48 311 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 FEVQ99581 238 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 TREX2Q9BQ50 279 aaPredicted RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 LRRC61Q9BV99 259 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 SAP130Q9H0E3 1048 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 RBM38Q9H0Z9 239 aaKnown RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 MIR1-1HGQ9H1L0 117 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 ANKRD19PQ9H560 264 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 CXorf21Q9HAI6 301 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 FANCEQ9HB96 536 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 EQTNQ9NQ60 294 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 POLE3Q9NRF9 147 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 CLN6Q9NWW5 311 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 GIN1Q9NXP7 522 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 KCND3Q9UK17 655 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 NDRG4Q9ULP0 352 aaKnown RBP6.5□□□□□ -1.37
USP39-219ENST00000496047 ERVK-11Q9UQG0 969 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 KLHL20Q9Y2M5 609 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 CEPT1Q9Y6K0 416 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 UNC13CQ8NB66 2214 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 SPTBN4Q9H254 2564 aa6.5□□□□□ -1.37
USP39-219ENST00000496047 PCDH15Q96QU1 1955 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 ABCA7Q8IZY2 2146 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 ADAMTS9Q9P2N4 1935 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 EME2A4GXA9 379 aaPredicted RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 EFCAB10A6NFE3 127 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 TLCD2A6NGC4 264 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 ZNF99A8MXY4 864 aaPredicted RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 C4orf51C9J302 202 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 PTGES3LE9PB15 166 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 H3BN98 237 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 TLR4O00206 839 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 PGRMC2O15173 223 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 P2RX6O15547 441 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 AQP9O43315 295 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 MITFO75030 526 aaPredicted RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 ATP1B1P05026 303 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 SMIM10L1P0DMW3 83 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 OSMP13725 252 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 CCNA2P20248 432 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 TNFRSF1BP20333 461 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 ELAVL4P26378 380 aaKnown RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 DCKP27707 260 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 MSX1P28360 303 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 PRKAR1BP31321 381 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 YAP1P46937 504 aaKnown RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 CAPZBP47756 277 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 EIF1AXP47813 144 aaKnown RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 IDH2P48735 452 aaKnown RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 PXNP49023 591 aaPredicted RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 CLK3P49761 638 aaKnown RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 GSK3AP49840 483 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 ST13P50502 369 aaKnown RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 HMGA2P52926 109 aa6.49□□□□□ -1.37
USP39-219ENST00000496047 RGS8P57771 180 aaPredicted RBP6.49□□□□□ -1.37
USP39-219ENST00000496047 ISL1P61371 349 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms