RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FKBP14Q9NWM8 211 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 ATG4BQ9Y4P1 393 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 V9GYH0 126 aa15.57■□□□□ 0.08
CCDC88B-210ENST00000494566 LRIT2A6NDA9 550 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 FABP12A6NFH5 140 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 LINC01565O15544 149 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 RPN2P04844 631 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 GDI1P31150 447 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 DENND4AQ7Z401 1863 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 FAM46DQ8NEK8 389 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 SLC7A13Q8TCU3 470 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 CREB3L4Q8TEY5 395 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 SLC9A6Q92581 669 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 FGF14Q92915 247 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 ZBED6CLQ96FA7 236 aaPredicted RBP15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 DCLRE1CQ96SD1 692 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 GPA33Q99795 319 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 TEX101Q9BY14 249 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 UCK2Q9BZX2 261 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 TBC1D17Q9HA65 648 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 SLC6A20Q9NP91 592 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 CD93Q9NPY3 652 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 PLCXD1Q9NUJ7 323 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 WBP1LQ9NX94 342 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 CCDC59Q9P031 241 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 ZAR1LA6NP61 321 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 CERS1P27544 350 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 HMGA2P52926 109 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 RPS25P62851 125 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 OLR1P78380 273 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 ALDH6A1Q02252 535 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 PRDX1Q06830 199 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 TMEM31Q5JXX7 168 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 DCST1Q5T197 706 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 PDZK1Q5T2W1 519 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 ACSM5Q6NUN0 579 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 ZNF544Q6NX49 715 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 RD3Q7Z3Z2 195 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 SHISA5Q8N114 240 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 ATP6V1C2Q8NEY4 427 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 RAB7BQ96AH8 199 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 SLC35G5Q96KT7 338 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 LRR1Q96L50 414 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 AMDHD1Q96NU7 426 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 HDHD5Q9BXW7 423 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 NEUROD4Q9HD90 331 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 A4GALTQ9NPC4 353 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 TRPV5Q9NQA5 729 aa15.56■□□□□ 0.08
CCDC88B-210ENST00000494566 OR6C70A6NIJ9 312 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 CRYBB2P43320 205 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 ARHGAP19Q14CB8 494 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 FLYWCH1Q4VC44 716 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 CRTC2Q53ET0 693 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 SYCE2Q6PIF2 218 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 TMEM107Q6UX40 140 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 IQCHQ86VS3 1027 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 YAF2Q8IY57 180 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 EFHD2Q96C19 240 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 BBS4Q96RK4 519 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 TMED9Q9BVK6 235 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 NXF2Q9GZY0 626 aaKnown RBP15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 MKLN1Q9UL63 735 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 CLEC4AQ9UMR7 237 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 A0A1W2PQU0 124 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 EML2O95834 649 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 PSKH1P11801 424 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 FBXO43Q4G163 708 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 PARM1Q6UWI2 310 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 ASCC1Q8N9N2 400 aaKnown RBP15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 LILRB4Q8NHJ6 448 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 KLHL6Q8WZ60 621 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 MRPS30Q9NP92 439 aaKnown RBP15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 REV1Q9UBZ9 1251 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 DPP7Q9UHL4 492 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 KCND3Q9UK17 655 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 NTNG1Q9Y2I2 539 aa15.55■□□□□ 0.08
CCDC88B-210ENST00000494566 ATG2AQ2TAZ0 1938 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 A0A0A6YYD5 115 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 C2orf92A0A1B0GVN3 265 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 A0A1W2PR48 441 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CEACAM5P06731 702 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 H1F0P07305 194 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 BUD31P41223 144 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 GSTM5P46439 218 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 KCNJ5P48544 419 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 PXNP49023 591 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 RAB28P51157 221 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 RORCP51449 518 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CLDN2P57739 230 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CSNK2BP67870 215 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 P2RY14Q15391 338 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 PCNPQ8WW12 178 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 ZG16BQ96DA0 208 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 CNIH4Q9P003 139 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 RWDD3Q9Y3V2 267 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 AP1M2Q9Y6Q5 423 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 ALPK2Q86TB3 2170 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 A0A0B4J293 547 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 H0Y8X5 98 aa15.54■□□□□ 0.08
CCDC88B-210ENST00000494566 AKR7A2O43488 359 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms