RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PRAMEF27A3QJZ7 478 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 URADA6NGE7 173 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ZNF860A6NHJ4 632 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 A8MU76 341 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ZNF99A8MXY4 864 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 M0QX08 132 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 M0R129 80 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 TNFRSF10AO00220 468 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 HMGN4O00479 90 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 B3GALT2O43825 422 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 FABP3P05413 133 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 LCKP06239 509 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 CSNK2A2P19784 350 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 CD1CP29017 333 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 CSF2RBP32927 897 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 GPC1P35052 558 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 HOXD12P35452 270 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 SEPHS1P49903 392 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 VSX2P58304 361 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 SELENOWP63302 87 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 OLR1P78380 273 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 DNASE1L3Q13609 305 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 TP53BP2Q13625 1128 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ELOAQ14241 798 aaKnown RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 GPR19Q15760 415 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 NPTX1Q15818 432 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 CYP27C1Q4G0S4 372 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 MANEAQ5SRI9 462 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 CCDC71Q8IV32 467 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 SLC30A8Q8IWU4 369 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 DNAJC22Q8N4W6 341 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 RAB8BQ92930 207 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 SLC35G5Q96KT7 338 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 AMBNQ9NP70 447 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 DAPK2Q9UIK4 370 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ATXN7L1Q9ULK2 861 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ANGPT4Q9Y264 503 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 ERGIC3Q9Y282 383 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 SH3GLB1Q9Y371 365 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 PCDHGA10Q9Y5H3 936 aa11.41□□□□□ -0.58
HDAC6-230ENST00000488543 PRAMEF25A6NGN4 478 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 CPN2P22792 545 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 TUBA3CQ13748 450 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 KCNAB1Q14722 419 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 RGS21Q2M5E4 152 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 OR2T5Q6IEZ7 315 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 TMPRSS9Q7Z410 1059 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 PIK3C3Q8NEB9 887 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 OR2T29Q8NH02 315 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 SLC38A5Q8WUX1 472 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 TRUB1Q8WWH5 349 aaKnown RBP11.4□□□□□ -0.58
HDAC6-230ENST00000488543 ITFG2Q969R8 447 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 NEURL2Q9BR09 285 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 NUDT22Q9BRQ3 303 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 RSPO3Q9BXY4 272 aaPredicted RBP11.4□□□□□ -0.58
HDAC6-230ENST00000488543 LYRM4Q9HD34 91 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 ZCCHC3Q9NUD5 404 aaKnown RBP11.4□□□□□ -0.58
HDAC6-230ENST00000488543 TBCCD1Q9NVR7 557 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 ORC6Q9Y5N6 252 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 SLC22A7Q9Y694 548 aa11.4□□□□□ -0.58
HDAC6-230ENST00000488543 EP300Q09472 2414 aaPredicted RBP11.4□□□□□ -0.58
HDAC6-230ENST00000488543 GALR3O60755 368 aaPredicted RBP11.4□□□□□ -0.59
HDAC6-230ENST00000488543 NADKO95544 446 aaPredicted RBP11.4□□□□□ -0.59
HDAC6-230ENST00000488543 ITGA1P56199 1179 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 MVKQ03426 396 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 LTB4RQ15722 352 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 RPS26P11Q5JNZ5 115 aaPredicted RBP11.4□□□□□ -0.59
HDAC6-230ENST00000488543 REEP3Q6NUK4 255 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 OR9A2Q8NGT5 310 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 CHPT1Q8WUD6 406 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 ATOH1Q92858 354 aaPredicted RBP11.4□□□□□ -0.59
HDAC6-230ENST00000488543 TMEM19Q96HH6 336 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 DUSP23Q9BVJ7 150 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 COL25A1Q9BXS0 654 aaPredicted RBP11.4□□□□□ -0.59
HDAC6-230ENST00000488543 OR51I1Q9H343 314 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 SEMA3GQ9NS98 782 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 RXFP3Q9NSD7 469 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 GMPPBQ9Y5P6 360 aa11.4□□□□□ -0.59
HDAC6-230ENST00000488543 KMT2EQ8IZD2 1858 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 LNP1A1A4G5 178 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 FAM20BO75063 409 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 CBFA2T3O75081 653 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 BCHEP06276 602 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 KRT20P35900 424 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 BUD31P41223 144 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-230ENST00000488543 GABRA4P48169 554 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 CD97P48960 835 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 GABARAPL2P60520 117 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 SIM1P81133 766 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-230ENST00000488543 PRTGQ2VWP7 1150 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 SHQ1Q6PI26 577 aaKnown RBP11.39□□□□□ -0.59
HDAC6-230ENST00000488543 TMEM107Q6UX40 140 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 AHSA2Q719I0 299 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 MCATQ8IVS2 390 aaKnown RBP11.39□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF655Q8N720 491 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-230ENST00000488543 ZNF540Q8NDQ6 660 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 TMEM52Q8NDY8 209 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 OR5T3Q8NGG3 340 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 RNF31Q96EP0 1072 aa11.39□□□□□ -0.59
HDAC6-230ENST00000488543 CNDP2Q96KP4 475 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms