RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MYOGP15173 224 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 MYL12AP19105 171 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 HIST1H1TP22492 207 aaPredicted RBP16.87■□□□□ 0.29
VIM-206ENST00000487938 CERS1P27544 350 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 RFX2P48378 723 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 COPZ1P61923 177 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 RPS25P62851 125 aaKnown RBP16.87■□□□□ 0.29
VIM-206ENST00000487938 DAB2P98082 770 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 CHRNEQ04844 493 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 FGL2Q14314 439 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 ZIC1Q15915 447 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 NDUFA9Q16795 377 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 ZNF311Q5JNZ3 666 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 AGBL4Q5VU57 503 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 OR8D4Q8NGM9 314 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 TM9SF4Q92544 642 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 SLC25A46Q96AG3 418 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 ZSCAN32Q9NX65 697 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 NTNG1Q9Y2I2 539 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 KIAA0100Q14667 2235 aaKnown RBP16.87■□□□□ 0.29
VIM-206ENST00000487938 CHD9Q3L8U1 2897 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 A0A0G2JPF8 293 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 HNRNPCL2B2RXH8 293 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 HNRNPCL3B7ZW38 293 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 CH25HO95992 272 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 HNRNPCL4P0DMR1 293 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 ACADMP11310 421 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 ATP5A1P25705 553 aaKnown RBP16.87■□□□□ 0.29
VIM-206ENST00000487938 SDC2P34741 201 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 CD79BP40259 229 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 TCEA2Q15560 299 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 KLHL22Q53GT1 634 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 TMEM240Q5SV17 173 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 SLC25A30Q5SVS4 291 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 ZNF362Q5T0B9 420 aaPredicted RBP16.87■□□□□ 0.29
VIM-206ENST00000487938 ABHD17CQ6PCB6 329 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 FAM131AQ6UXB0 335 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 LAPTM4BQ86VI4 370 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 FBXL6Q8N531 539 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 ZFP41Q8N8Y5 198 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 OR52E1Q8NGJ3 308 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 TMCO6Q96DC7 493 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 FAM46AQ96IP4 442 aaKnown RBP16.87■□□□□ 0.29
VIM-206ENST00000487938 TM9SF2Q99805 663 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 SRRQ9GZT4 340 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 NEK6Q9HC98 313 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 SEMA4GQ9NTN9 838 aa16.87■□□□□ 0.29
VIM-206ENST00000487938 THAP10Q9P2Z0 257 aaPredicted RBP16.87■□□□□ 0.29
VIM-206ENST00000487938 A0A1W2PP55 124 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 A0A1W2PQL4 384 aaPredicted RBP16.86■□□□□ 0.29
VIM-206ENST00000487938 LINC01553A4QN01 128 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 FAM170BA6NMN3 283 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 IL7P13232 177 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 MC3RP41968 323 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 WNT4P56705 351 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 DNAH14Q0VDD8 3507 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 TMEM35AQ53FP2 167 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 ADGRD2Q7Z7M1 963 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 UBQLNLQ8IYU4 475 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 HDDC3Q8N4P3 179 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 LINC00471Q8N535 108 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 SYT14Q8NB59 555 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 ZNF784Q8NCA9 323 aaPredicted RBP16.86■□□□□ 0.29
VIM-206ENST00000487938 TEX47Q8TBZ9 253 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 TMEM163Q8TC26 289 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 FGF13Q92913 245 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 SMARCD2Q92925 531 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 OR7D2Q96RA2 312 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 PINK1Q9BXM7 581 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 MIXL1Q9H2W2 232 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 SPHK1Q9NYA1 384 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 PLEKHB1Q9UF11 243 aaPredicted RBP16.86■□□□□ 0.29
VIM-206ENST00000487938 A0A1W2PQ09 198 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 COQ9O75208 318 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 FHP07954 510 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 ACP2P11117 423 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 PTNP21246 168 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 TRHRP34981 398 aaPredicted RBP16.86■□□□□ 0.29
VIM-206ENST00000487938 HTR3AP46098 478 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 CAV3P56539 151 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 UBE3AQ05086 875 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 BCL2A1Q16548 175 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 CRTC2Q53ET0 693 aaPredicted RBP16.86■□□□□ 0.29
VIM-206ENST00000487938 SLC27A4Q6P1M0 643 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 LHFPL3Q86UP9 236 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 OR9A2Q8NGT5 310 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 KAT2AQ92830 837 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 ZNF486Q96H40 463 aaPredicted RBP16.86■□□□□ 0.29
VIM-206ENST00000487938 ZFR2Q9UPR6 939 aaKnown RBP16.86■□□□□ 0.29
VIM-206ENST00000487938 ENTPD4Q9Y227 616 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 GPSM3Q9Y4H4 160 aa16.86■□□□□ 0.29
VIM-206ENST00000487938 IQCMA0A1B0GVH7 501 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 A8MV72 311 aaPredicted RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 NR2F6P10588 404 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 GSTM3P21266 225 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 AVPR1BP47901 424 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 SOX9P48436 509 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 IFITM2Q01629 132 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 CST6Q15828 149 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 TYW3Q6IPR3 259 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms