RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 NXF5Q9H1B4 397 aaKnown RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 CLMPQ9H6B4 373 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 LIN28AQ9H9Z2 209 aaKnown RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 FOLH1BQ9HBA9 442 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 HHATLQ9HCP6 504 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 TMEM45AQ9NWC5 275 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 ZIM2Q9NZV7 527 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 TRIM33Q9UPN9 1127 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 GPR55Q9Y2T6 319 aaPredicted RBP13.51□□□□□ -0.25
LIMS3-205ENST00000487150 SCN2AQ99250 2005 aa13.51□□□□□ -0.25
LIMS3-205ENST00000487150 ANKRD33BA6NCL7 494 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 CFLARO15519 480 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 EMC8O43402 210 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 PEX1O43933 1283 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 HS6ST1O60243 411 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 EDF1O60869 148 aaKnown RBP13.5□□□□□ -0.25
LIMS3-205ENST00000487150 PPM1BO75688 479 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 LAMP1P11279 417 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 EDN3P14138 238 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 IL12BP29460 328 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 S100A3P33764 101 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 BNC2Q6ZN30 1099 aaPredicted RBP13.5□□□□□ -0.25
LIMS3-205ENST00000487150 C16orf47Q6ZP98 133 aaPredicted RBP13.5□□□□□ -0.25
LIMS3-205ENST00000487150 MIER2Q8N344 545 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 AMER2Q8N7J2 671 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 TMCO6Q96DC7 493 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 SDR39U1Q9NRG7 319 aaPredicted RBP13.5□□□□□ -0.25
LIMS3-205ENST00000487150 ASF1BQ9NVP2 202 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 BOKQ9UMX3 212 aaPredicted RBP13.5□□□□□ -0.25
LIMS3-205ENST00000487150 SNX8Q9Y5X2 465 aa13.5□□□□□ -0.25
LIMS3-205ENST00000487150 CPAMD8Q8IZJ3 1885 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 PRSS51A0A1B0GVH4 220 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 OR6C70A6NIJ9 312 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF195O14628 629 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ANKRD28O15084 1053 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 SNX4O95219 450 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 KCNH1O95259 989 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 IL6P05231 212 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ALDOCP09972 364 aaKnown RBP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 CNR1P21554 472 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 PTGER1P34995 402 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 MRPL19P49406 292 aaKnown RBP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 MEOX1P50221 254 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 AQP5P55064 265 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 KCNJ2P63252 427 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ALDH6A1Q02252 535 aaKnown RBP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 DUSP8Q13202 625 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 SNTA1Q13424 505 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 DECR1Q16698 335 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 SLC9B1Q4ZJI4 515 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 KRTCAP3Q53RY4 240 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 TMEM81Q6P7N7 255 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 LYPD8Q6UX82 237 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 MSANTD1Q6ZTZ1 278 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 NUP54Q7Z3B4 507 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 MAVSQ7Z434 540 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 MDGA2Q7Z553 956 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 SLC22A16Q86VW1 577 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF227Q86WZ6 799 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 SLC44A2Q8IWA5 706 aaPredicted RBP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 TRIML2Q8N7C3 387 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ZFP62Q8NB50 900 aaPredicted RBP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ST6GALNAC3Q8NDV1 305 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 NUP43Q8NFH3 380 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 OMA1Q96E52 524 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 MAGED4Q96JG8 741 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 SLX1AQ9BQ83 275 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 LMF2Q9BU23 707 aaKnown RBP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 RABEP2Q9H5N1 569 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 CCDC134Q9H6E4 229 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ZCCHC3Q9NUD5 404 aaKnown RBP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 B4GALT7Q9UBV7 327 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 FAF1Q9UNN5 650 aaPredicted RBP13.49□□□□□ -0.25
LIMS3-205ENST00000487150 DTX4Q9Y2E6 619 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 PCDHGB3Q9Y5G1 929 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 GPR45Q9Y5Y3 372 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 DOCK10Q96BY6 2186 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 ZNF462Q96JM2 2506 aa13.49□□□□□ -0.25
LIMS3-205ENST00000487150 TFECO14948 347 aaPredicted RBP13.48□□□□□ -0.25
LIMS3-205ENST00000487150 SLC22A3O75751 556 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 C6orf47O95873 294 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 LCN1P31025 176 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 SOAT1P35610 550 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 SOX18P35713 384 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 IDH3AP50213 366 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 CDK9P50750 372 aaKnown RBP13.48□□□□□ -0.25
LIMS3-205ENST00000487150 ANXA11P50995 505 aaKnown RBP13.48□□□□□ -0.25
LIMS3-205ENST00000487150 TXNL4AP83876 142 aaKnown RBP13.48□□□□□ -0.25
LIMS3-205ENST00000487150 PLGLB1Q02325 96 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 RBPJQ06330 500 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 TP53BP2Q13625 1128 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 NNATQ16517 81 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 PRSS53Q2L4Q9 553 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 FAM174BQ3ZCQ3 159 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 PRR30Q53SZ7 412 aaPredicted RBP13.48□□□□□ -0.25
LIMS3-205ENST00000487150 COLEC12Q5KU26 742 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.48□□□□□ -0.25
LIMS3-205ENST00000487150 SULF2Q8IWU5 870 aa13.48□□□□□ -0.25
LIMS3-205ENST00000487150 OR2M7Q8NG81 312 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms