RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 NAGAP17050 411 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 ATP5F1P24539 256 aaPredicted RBP19.66■□□□□ 0.74
USP40-215ENST00000484528 ASCL1P50553 236 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 ZNF136P52737 540 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 NAGLUP54802 743 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 BTKQ06187 659 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 ZNF628Q5EBL2 1059 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 PM20D2Q8IYS1 436 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 ABTB1Q969K4 478 aaPredicted RBP19.66■□□□□ 0.74
USP40-215ENST00000484528 TMBIM1Q969X1 311 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 WDYHV1Q96HA8 205 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 SH3GL2Q99962 352 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 DNAJB12Q9NXW2 375 aaKnown RBP19.66■□□□□ 0.74
USP40-215ENST00000484528 PRODH2Q9UF12 536 aa19.66■□□□□ 0.74
USP40-215ENST00000484528 MAP1AP78559 2803 aaPredicted RBP19.66■□□□□ 0.74
USP40-215ENST00000484528 IL2RAP01589 272 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 FAM153BP0C7A2 387 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 IMPDH1P20839 514 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 KIR2DL3P43628 341 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 PPICP45877 212 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 AGFG1P52594 562 aaKnown RBP19.65■□□□□ 0.74
USP40-215ENST00000484528 ART1P52961 327 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 CORO7P57737 925 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 ACSM2AQ08AH3 577 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 LCP2Q13094 533 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 FAM153CQ494X1 144 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 NSUN5P2Q63ZY6 315 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 ACSM2BQ68CK6 577 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 SLC30A6Q6NXT4 461 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 SPNS3Q6ZMD2 512 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 TRMT10CQ7L0Y3 403 aaKnown RBP19.65■□□□□ 0.74
USP40-215ENST00000484528 CDC26Q8NHZ8 85 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 GPATCH1Q9BRR8 931 aaKnown RBP19.65■□□□□ 0.74
USP40-215ENST00000484528 CRIM1Q9NZV1 1036 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 TBK1Q9UHD2 729 aa19.65■□□□□ 0.74
USP40-215ENST00000484528 PRRC2AP48634 2157 aaKnown RBP19.64■□□□□ 0.74
USP40-215ENST00000484528 FRG2CA6NGY1 282 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 CDH16O75309 829 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 REM1O75628 298 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 RHOXF2BP0C7M4 288 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 PYGBP11216 843 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 DRD5P21918 477 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 TIA1P31483 386 aaKnown RBP eCLIP19.64■□□□□ 0.73
USP40-215ENST00000484528 DNAJA1P31689 397 aaKnown RBP19.64■□□□□ 0.73
USP40-215ENST00000484528 TIMP3P35625 211 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 PRKAA2P54646 552 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 DCAF7P61962 342 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 NHSL2Q5HYW2 709 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 TMEM81Q6P7N7 255 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 POMZP3Q6PJE2 187 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 SLC22A9Q8IVM8 553 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 IFT20Q8IY31 132 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 GSPT2Q8IYD1 628 aaKnown RBP19.64■□□□□ 0.73
USP40-215ENST00000484528 CCNYL1Q8N7R7 359 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 GBP7Q8N8V2 638 aaPredicted RBP19.64■□□□□ 0.73
USP40-215ENST00000484528 ZNF675Q8TD23 568 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 C16orf78Q8WTQ4 265 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 L3HYPDHQ96EM0 354 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 RHOXF2Q9BQY4 288 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 POLDIP3Q9BY77 421 aaKnown RBP19.64■□□□□ 0.73
USP40-215ENST00000484528 EPB41L4BQ9H329 900 aa19.64■□□□□ 0.73
USP40-215ENST00000484528 PSMC3IPQ9P2W1 217 aaPredicted RBP19.64■□□□□ 0.73
USP40-215ENST00000484528 GPR55Q9Y2T6 319 aaPredicted RBP19.64■□□□□ 0.73
USP40-215ENST00000484528 CTAG2O75638 210 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 DRD2P14416 443 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 TCEA1P23193 301 aaKnown RBP19.63■□□□□ 0.73
USP40-215ENST00000484528 FOXA1P55317 472 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 SLC29A2Q14542 456 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 SPIN4Q56A73 249 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 NPSR1Q6W5P4 371 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 LCA5Q86VQ0 697 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 WDSUB1Q8N9V3 476 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 OR14L1PQ8NHC6 308 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 RNASE6Q93091 150 aaKnown RBP19.63■□□□□ 0.73
USP40-215ENST00000484528 COL21A1Q96P44 957 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 ADOQ96SZ5 270 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 LIME1Q9H400 295 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 GSTO2Q9H4Y5 243 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 GIMAP4Q9NUV9 329 aa19.63■□□□□ 0.73
USP40-215ENST00000484528 CD8B2A6NJW9 211 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 SYT5O00445 386 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 TO15178 435 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 ENO1P06733 434 aaKnown RBP19.62■□□□□ 0.73
USP40-215ENST00000484528 CT45A8P0DMV1 189 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 CT45A9P0DMV2 189 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 PKNOX1P55347 436 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 SRYQ05066 204 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 SNTA1Q13424 505 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 SF3B4Q15427 424 aaKnown RBP eCLIP19.62■□□□□ 0.73
USP40-215ENST00000484528 ERCC6LQ2NKX8 1250 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 FLYWCH1Q4VC44 716 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 CT45A2Q5DJT8 189 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 PLXDC2Q6UX71 529 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 C9orf106Q8NAJ2 232 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 MZB1Q8WU39 189 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 VSTM2LQ96N03 204 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 BTBD9Q96Q07 612 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 FOLH1BQ9HBA9 442 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 MID1IP1Q9NPA3 183 aa19.62■□□□□ 0.73
USP40-215ENST00000484528 SLC35C2Q9NQQ7 365 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms