RNA–Protein interactions for RNA: ENST00000478349.6

SMARCE1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 1,090 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-209ENST00000478349 LCP2Q13094 533 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 EXOSC7Q15024 291 aaKnown RBP13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 ZNF678Q5SXM1 525 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 TIFABQ6ZNK6 161 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 IFT20Q8IY31 132 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 FAM9CQ8IZT9 166 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 FAM83FQ8NEG4 500 aaPredicted RBP13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 TNIP2Q8NFZ5 429 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 MBD3L2Q8NHZ7 208 aaPredicted RBP13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 ZPLD1Q8TCW7 415 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 ACMSDQ8TDX5 336 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 UCN3Q969E3 161 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 TM4SF18Q96CE8 201 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 CTHRC1Q96CG8 243 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 TM9SF2Q99805 663 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 EHD3Q9NZN3 535 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 DMGDHQ9UI17 866 aaKnown RBP13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 ZNF639Q9UID6 485 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 EXO1Q9UQ84 846 aaKnown RBP13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 SLC6A5Q9Y345 797 aa13.19□□□□□ -0.3
SMARCE1-209ENST00000478349 TUBAL3A6NHL2 446 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 A6NNC1 897 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 ICOSLGO75144 302 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 COQ9O75208 318 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 REM1O75628 298 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 CPN1P15169 458 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 CHMP24386 653 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 DNASE1P24855 282 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 DGKQP52824 942 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 PPP2R2AP63151 447 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 EIPR1Q53HC9 387 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 WIPI1Q5MNZ9 446 aaPredicted RBP13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 FNDC7Q5VTL7 733 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 FAM111BQ6SJ93 734 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 IFNEQ86WN2 208 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 CEP112Q8N8E3 955 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 RELL2Q8NC24 303 aaPredicted RBP13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 NOA1Q8NC60 698 aaKnown RBP13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 UHMK1Q8TAS1 419 aaKnown RBP13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 HGDQ93099 445 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 NTNG2Q96CW9 530 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 CNRIP1Q96F85 164 aaPredicted RBP13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 BTBD9Q96Q07 612 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 FOXC2Q99958 501 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 SH3GL2Q99962 352 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 SFXN3Q9BWM7 321 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 RASSF1Q9NS23 344 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 TAS2R9Q9NYW1 312 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 CRIM1Q9NZV1 1036 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 DKKL1Q9UK85 242 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 MAPRE3Q9UPY8 281 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 DTX4Q9Y2E6 619 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 DLGAP4Q9Y2H0 992 aa13.18□□□□□ -0.3
SMARCE1-209ENST00000478349 ANKHD1Q8IWZ3 2542 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 PHF3Q92576 2039 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 FAM221AA4D161 298 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 CBX7O95931 251 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 IL3P08700 152 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 TMIGD3P0DMS9 266 aaPredicted RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 PCSK2P16519 638 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 TSPAN8P19075 237 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 IMPDH1P20839 514 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 TIA1P31483 386 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 CPA2P48052 419 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 DIO3P55073 304 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 MGAT2Q10469 447 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 TRMT12Q53H54 448 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 SEM1Q6ZVN7 128 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 RPS27LQ71UM5 84 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 CAMKMTQ7Z624 323 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 PLCZ1Q86YW0 608 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 HOMEZQ8IX15 550 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 NAXEQ8NCW5 288 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 SLC35A4Q96G79 324 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 WDYHV1Q96HA8 205 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 TMEM237Q96Q45 408 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 BBS4Q96RK4 519 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 HBEGFQ99075 208 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 GPATCH1Q9BRR8 931 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 OR2B2Q9GZK3 357 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 HHATLQ9HCP6 504 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 SERHLQ9NQF3 203 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 MIEF1Q9NQG6 463 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 TAS2R10Q9NYW0 307 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 PSMC3IPQ9P2W1 217 aaPredicted RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 MRTO4Q9UKD2 239 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 GPR55Q9Y2T6 319 aaPredicted RBP13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 OR10H1Q9Y4A9 318 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 WIF1Q9Y5W5 379 aa13.17□□□□□ -0.3
SMARCE1-209ENST00000478349 DNAJC13O75165 2243 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 UGT2B11O75310 529 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 CRCPO75575 148 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 TACR1P25103 407 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 ECHS1P30084 290 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 NTSP30990 170 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 SRD5A2P31213 254 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 EMDP50402 254 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 ZNF136P52737 540 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 IST1P53990 364 aa13.16□□□□□ -0.3
SMARCE1-209ENST00000478349 PRKAA2P54646 552 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms