RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 IGHV3-16A0A0C4DH30 117 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 TEX48A0A1B0GUV7 120 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 RNF212BA8MTL3 300 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 RASGRF2O14827 1237 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 PDGFBP01127 241 aaPredicted RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 MT-ND1P03886 318 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 GHRP10912 638 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 FUT1P19526 365 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 TMOD1P28289 359 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 SPRP35270 261 aaPredicted RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 CD86P42081 329 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 MATKP42679 507 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 CAMLGP49069 296 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 NUMBP49757 651 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 RAG2P55895 527 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 SLC26A5P58743 744 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 MYBPC1Q00872 1141 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 GABPB1Q06547 395 aaPredicted RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 SPP2Q13103 211 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 NME3Q13232 169 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 HAGHQ16775 308 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 ZSWIM7Q19AV6 140 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 SHROOM1Q2M3G4 852 aaPredicted RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 ANKRD55Q3KP44 614 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 MARC1Q5VT66 337 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 EMBQ6PCB8 327 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 REG3GQ6UW15 175 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 CWC27Q6UX04 472 aaKnown RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 DPY19L2P2Q6ZN68 376 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 RBM43Q6ZSC3 357 aaKnown RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 VASH2Q86V25 355 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 LUZP1Q86V48 1076 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 PYROXD2Q8N2H3 581 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 RNF148Q8N7C7 305 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF491Q8N8L2 437 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 MLKLQ8NB16 471 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF397Q8NF99 534 aaPredicted RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 DQX1Q8TE96 717 aaKnown RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 U2AF1L4Q8WU68 220 aaKnown RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 NTNG2Q96CW9 530 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 CCDC51Q96ER9 411 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF285Q96NJ3 590 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 SDHCQ99643 169 aaPredicted RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 NDUFAF3Q9BU61 184 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 YTHDF1Q9BYJ9 559 aaKnown RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 ATG10Q9H0Y0 220 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 FAM124BQ9H5Z6 455 aaPredicted RBP2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 TMEM231Q9H6L2 316 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 NRN1Q9NPD7 142 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 STARD5Q9NSY2 213 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 CUTCQ9NTM9 273 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 EMCNQ9ULC0 261 aa2.27□□□□□ -2.05
CCDC88A-212ENST00000474059 CYB561D2O14569 222 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 EI24O14681 340 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 STK17BO94768 372 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ECDO95905 644 aaPredicted RBP2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 IGHG3P01860 377 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 FCGR3AP08637 254 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 RALAP11233 206 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 DNAJB1P25685 340 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 UCP1P25874 307 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 CALML3P27482 149 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 PRDX2P32119 198 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 MAGEA4P43358 317 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ASMTP46597 345 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 SGSHP51688 502 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 NAAAQ02083 359 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 FUT7Q11130 342 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 SNX1Q13596 522 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 CYLC2Q14093 348 aaPredicted RBP2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 PDIA5Q14554 519 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 CEBPEQ15744 281 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 PCK2Q16822 640 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 Q1RN00 199 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 TMEM44Q2T9K0 475 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF699Q32M78 642 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 LRIT3Q3SXY7 679 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 TTC31Q49AM3 519 aaPredicted RBP2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 IL23RQ5VWK5 629 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 LEMD1Q68G75 181 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 RAET1GQ6H3X3 334 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 IRGCQ6NXR0 463 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ARMCX5Q6P1M9 558 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 RFWD3Q6PCD5 774 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ATRAIDQ6UW56 229 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 MOB2Q70IA6 237 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 MINDY2Q8NBR6 621 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 FAM71CQ8NEG0 241 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 OR56B1Q8NGI3 324 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 OR4Q3Q8NH05 313 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 BIRC7Q96CA5 298 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 RAB3CQ96E17 227 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 C14orf79Q96F83 325 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 CPXM1Q96SM3 734 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 KCNK16Q96T55 309 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ST6GALNAC5Q9BVH7 336 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 GPR174Q9BXC1 333 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 NMNAT2Q9BZQ4 307 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 RAB17Q9H0T7 212 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 RNF41Q9H4P4 317 aaPredicted RBP2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 372.1 ms