RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 UPK3BL1B0FP48 263 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 C9JVG2 144 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 UPK3BL2E5RIL1 263 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 HMGCS1Q01581 520 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SP2Q02086 613 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SGCBQ16585 318 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 LRRC56Q8IYG6 542 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-209ENST00000472056 MUL1Q969V5 352 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 MCHR1Q99705 422 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 C2orf42Q9NWW7 574 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SGCEO43556 437 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 LPLP06858 475 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 FGF4P08620 206 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 GNSP15586 552 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SHMT2P34897 504 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 MLC1Q15049 377 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 ESCO2Q56NI9 601 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 FUT10Q6P4F1 479 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 LINGO4Q6UY18 593 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 ZC3H3Q8IXZ2 948 aaKnown RBP12.7□□□□□ -0.38
COL6A3-209ENST00000472056 OR14C36Q8NHC7 312 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 C17orf62Q9BQA9 187 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 EVLQ9UI08 416 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SLC27A5Q9Y2P5 690 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 GOSR2O14653 212 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 HLA-HP01893 362 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 HEXBP07686 556 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 GAAP10253 952 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 DUSP7Q16829 419 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 PRSS55Q6UWB4 352 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-209ENST00000472056 LRRN4Q8WUT4 740 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SORCS1Q8WY21 1168 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SH3YL1Q96HL8 342 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-209ENST00000472056 NIPSNAP3BQ9BS92 247 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 NLKQ9UBE8 527 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 ECM29Q5VYK3 1845 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 NFKBIEO00221 500 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 PNMTP11086 282 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SEC22CQ9BRL7 303 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 DLGAP4Q9Y2H0 992 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 PCDHGC4Q9Y5F7 938 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 MED1Q15648 1581 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-209ENST00000472056 TGFB1P01137 390 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 GABRA5P31644 462 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 HBG1P69891 147 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 HBG2P69892 147 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 CAP1Q01518 475 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 TLE4Q04727 773 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 TRMT10AQ8TBZ6 339 aaKnown RBP12.7□□□□□ -0.38
COL6A3-209ENST00000472056 CHTF18Q8WVB6 975 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 DCUN1D4Q92564 292 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM125Q96AQ2 219 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 PIGMQ9H3S5 423 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 OR2S2Q9NQN1 319 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 NEMP2A6NFY4 417 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 BHLHE40O14503 412 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 FMO6PO60774 539 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 MPC1LP0DKB6 136 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 RPL35P42766 123 aaKnown RBP12.7□□□□□ -0.38
COL6A3-209ENST00000472056 POM121L1PQ3SYA9 428 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 MOB1BQ7L9L4 216 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 HERVK_113Q902F9 699 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SLC25A36Q96CQ1 311 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 KLRF1Q9NZS2 232 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 NR2E3Q9Y5X4 410 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 C1orf226A1L170 272 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 IQCF5A8MTL0 148 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SOCS2O14508 198 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 SOX14O95416 240 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 AMY2AP04746 511 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 GRIK5Q16478 980 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 UGCGQ16739 394 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM236Q5W0B7 351 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 PET117Q6UWS5 81 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM135Q86UB9 458 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 CPT1CQ8TCG5 803 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 POLE4Q9NR33 117 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 PARPBPQ9NWS1 579 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 CA5BQ9Y2D0 317 aa12.7□□□□□ -0.38
COL6A3-209ENST00000472056 AKAP6Q13023 2319 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 ADH1BP00325 375 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TNFP01375 233 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 RING1Q06587 406 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TSSK4Q6SA08 328 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 RBMS3Q6XE24 437 aaKnown RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 NPLOC4Q8TAT6 608 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 THAP7Q9BT49 309 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 PIK3C2AO00443 1686 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 OR5K4A6NMS3 321 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CST3P01034 146 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF16P17020 682 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 PRKCAP17252 672 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TCEA1P23193 301 aaKnown RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 NFYBP25208 207 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 SERPINF1P36955 418 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 IL13RA1P78552 427 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 MLLT11Q13015 90 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 PPP1R3AQ16821 1122 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM164Q5U3C3 297 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 DESI1Q6ICB0 168 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms