RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TRIM33Q9UPN9 1127 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 PCDHGB6Q9Y5F9 930 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 PCDHGA10Q9Y5H3 936 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 NPFFR2Q9Y5X5 522 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 COPG1Q9Y678 874 aaKnown RBP11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ITPR1Q14643 2758 aa11.03□□□□□ -0.64
VPS13D-204ENST00000469054 ATRXP46100 2492 aa11.02□□□□□ -0.64
VPS13D-204ENST00000469054 ATMQ13315 3056 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 FAM208BQ5VWN6 2430 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 FAM234BA2RU67 622 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 TTC36A6NLP5 189 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 TTLL8A6PVC2 850 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 CPSF4O95639 269 aaKnown RBP11.02□□□□□ -0.65
VPS13D-204ENST00000469054 SP1P08047 785 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 NAGAP17050 411 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 NCF2P19878 526 aaPredicted RBP11.02□□□□□ -0.65
VPS13D-204ENST00000469054 LSP1P33241 339 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 ZFP36L2P47974 494 aaKnown RBP11.02□□□□□ -0.65
VPS13D-204ENST00000469054 CORO7P57737 925 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 PSPHP78330 225 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 FOXK1P85037 733 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 PSG6Q00889 435 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 LRRC74AQ0VAA2 488 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 C19orf57Q0VDD7 668 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 SF3A3Q12874 501 aaKnown RBP eCLIP11.02□□□□□ -0.65
VPS13D-204ENST00000469054 ZNF155Q12901 538 aaPredicted RBP11.02□□□□□ -0.65
VPS13D-204ENST00000469054 ZNHIT3Q15649 155 aaPredicted RBP11.02□□□□□ -0.65
VPS13D-204ENST00000469054 NNATQ16517 81 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 MAPKAPK3Q16644 382 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 ZCCHC12Q6PEW1 402 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 RTL4Q6ZR62 310 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 SZRD1Q7Z422 152 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 MDGA2Q7Z553 956 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 GOLM1Q8NBJ4 401 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 TMEM178AQ8NBL3 297 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 OR56A1Q8NGH5 318 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 OR4A15Q8NGL6 344 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 SFXN5Q8TD22 340 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 MOAP1Q96BY2 351 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 CCDC115Q96NT0 180 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 MS4A4EQ96PG1 132 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 LMF2Q9BU23 707 aaKnown RBP11.02□□□□□ -0.65
VPS13D-204ENST00000469054 HES7Q9BYE0 225 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 RABEP2Q9H5N1 569 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 TIMMDC1Q9NPL8 285 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 KLHL1Q9NR64 748 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 ZCCHC3Q9NUD5 404 aaKnown RBP11.02□□□□□ -0.65
VPS13D-204ENST00000469054 TMEM45AQ9NWC5 275 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 FAM53CQ9NYF3 392 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 KLHL14Q9P2G3 628 aa11.02□□□□□ -0.65
VPS13D-204ENST00000469054 CNTRLQ7Z7A1 2325 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 NME2P1O60361 137 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 NME2P22392 152 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 ABCD3P28288 659 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 GABRA3P34903 492 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 MAP3K8P41279 467 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 PRIM2P49643 509 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 TMED10P49755 219 aaKnown RBP11.01□□□□□ -0.65
VPS13D-204ENST00000469054 SEC24CP53992 1094 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 GNGT1P63211 74 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 GAB1Q13480 694 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 NTRK2Q16620 822 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 SPDYE7PQ495Y7 208 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 VPS26BQ4G0F5 336 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 BHLHB9Q6PI77 547 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 GALNTL5Q7Z4T8 443 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 WDR53Q7Z5U6 358 aaPredicted RBP11.01□□□□□ -0.65
VPS13D-204ENST00000469054 FUNDC1Q8IVP5 155 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 SLC44A2Q8IWA5 706 aaPredicted RBP11.01□□□□□ -0.65
VPS13D-204ENST00000469054 PRR22Q8IZ63 422 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 SLC34A3Q8N130 599 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 CDRT4Q8N9R6 151 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 PSD4Q8NDX1 1056 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 GOT1L1Q8NHS2 421 aaPredicted RBP11.01□□□□□ -0.65
VPS13D-204ENST00000469054 HOXB13Q92826 284 aaPredicted RBP11.01□□□□□ -0.65
VPS13D-204ENST00000469054 OMA1Q96E52 524 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 PANX1Q96RD7 426 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 Q9N2J8 555 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 SH2D2AQ9NP31 389 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 EQTNQ9NQ60 294 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 CCDC167Q9P0B6 97 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 MAP10Q9P2G4 905 aa11.01□□□□□ -0.65
VPS13D-204ENST00000469054 KLF13Q9Y2Y9 288 aaPredicted RBP11.01□□□□□ -0.65
VPS13D-204ENST00000469054 TNRC6AQ8NDV7 1962 aaKnown RBP11.01□□□□□ -0.65
VPS13D-204ENST00000469054 SMG1Q96Q15 3661 aaKnown RBP11□□□□□ -0.65
VPS13D-204ENST00000469054 PIEZO2Q9H5I5 2752 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 GMNCA6NCL1 334 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 KLRC4-KLRK1H3BQV0 150 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 PPM1BO75688 479 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 NKX2-2O95096 273 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 RASAL1O95294 804 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 HMGN2P05204 90 aaKnown RBP11□□□□□ -0.65
VPS13D-204ENST00000469054 UQCRC2P22695 453 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 SOAT1P35610 550 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 MLLT10P55197 1068 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 FBXW4P57775 412 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 KCNK10P57789 538 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 PLCXD2Q0VAA5 305 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 TP53BP2Q13625 1128 aa11□□□□□ -0.65
VPS13D-204ENST00000469054 RCAN2Q14206 197 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms