RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 KRBOX4Q5JUW0 171 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 UBE2UQ5VVX9 321 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 ZNF551Q7Z340 670 aaPredicted RBP7.4□□□□□ -1.22
NEDD9-204ENST00000448183 COMMD6Q7Z4G1 85 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 TMEM173Q86WV6 379 aaPredicted RBP7.4□□□□□ -1.22
NEDD9-204ENST00000448183 GKN2Q86XP6 184 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 NRMQ8IXM6 262 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 ZFP90Q8TF47 636 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 FKBP10Q96AY3 582 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 FAM46AQ96IP4 442 aaKnown RBP7.4□□□□□ -1.22
NEDD9-204ENST00000448183 SLC2A4RGQ9NR83 387 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 CNTRLQ7Z7A1 2325 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 TRAPPC13A5PLN9 417 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 MEGF11A6BM72 1044 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 VSTM5A8MXK1 200 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 F8W036 122 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 ARPC5O15511 151 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 CLEC3AO75596 197 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 RFPL3O75679 317 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 OR8U9P0C7N5 309 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 GRPRP30550 384 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 PRSS3P35030 304 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 HOXD12P35452 270 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 MAGEA3P43357 314 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 ALDH3B2P48448 385 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 ZNF84P51523 738 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 BLOC1S1P78537 153 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 GSTM4Q03013 218 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 GK3PQ14409 553 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 SGCAQ16586 387 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 TMEM164Q5U3C3 297 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 MANEALQ5VSG8 457 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 SHFQ7M4L6 423 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 TP53INP2Q8IXH6 220 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 OR9Q2Q8NGE9 314 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 OR4K13Q8NH42 304 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 NPLOC4Q8TAT6 608 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 C16orf78Q8WTQ4 265 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 UTP4Q969X6 686 aaKnown RBP7.4□□□□□ -1.22
NEDD9-204ENST00000448183 C16orf58Q96GQ5 468 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 PGAM5Q96HS1 289 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 ZNF300Q96RE9 604 aaPredicted RBP7.4□□□□□ -1.22
NEDD9-204ENST00000448183 GAS2L1Q99501 681 aaPredicted RBP7.4□□□□□ -1.22
NEDD9-204ENST00000448183 KCNK13Q9HB14 408 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 RDH14Q9HBH5 336 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 DCAF13Q9NV06 445 aaKnown RBP7.4□□□□□ -1.22
NEDD9-204ENST00000448183 B3GNT3Q9Y2A9 372 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 SLC45A1Q9Y2W3 748 aa7.4□□□□□ -1.22
NEDD9-204ENST00000448183 TRAV18A0A075B6X5 111 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 ZNF850A8MQ14 1090 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 A8MU76 341 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 SLC22A5O76082 557 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 CRYZL1O95825 349 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 TFP02787 698 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 CAPNS1P04632 268 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 RNH1P13489 461 aaKnown RBP7.4□□□□□ -1.23
NEDD9-204ENST00000448183 TNFRSF1BP20333 461 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 LUMP51884 338 aaPredicted RBP7.4□□□□□ -1.23
NEDD9-204ENST00000448183 RAB6CQ53S08 254 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 EOGTQ5NDL2 527 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 KIAA0319Q5VV43 1072 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 LETMD1Q6P1Q0 360 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 ZNF529Q6P280 563 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 NAGSQ8N159 534 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 IQCF1Q8N6M8 205 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 TBC1D15Q8TC07 691 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 PXYLP1Q8TE99 480 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 ARL11Q969Q4 196 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 APIPQ96GX9 242 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 ZNF559Q9BR84 538 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 RAB6CQ9H0N0 254 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 MMP28Q9H239 520 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 ZFP57Q9NU63 452 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 DKKL1Q9UK85 242 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 NUBP2Q9Y5Y2 271 aa7.4□□□□□ -1.23
NEDD9-204ENST00000448183 DLG5Q8TDM6 1919 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 TCRBV3S1A0A5B6 114 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 OR6C74A6NCV1 312 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 GPR37L1O60883 481 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 PGCP20142 388 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 GPX3P22352 226 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CXCR4P61073 352 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ARL6IP1Q15041 203 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 NNATQ16517 81 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ZNF792Q3KQV3 632 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 OR4C11Q6IEV9 310 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CGB2Q6NT52 195 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 GRASPQ7Z6J2 395 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 SLC22A8Q8TCC7 542 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 SLC12A9Q9BXP2 914 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 OR51E2Q9H255 320 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 MTHFD2LQ9H903 347 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 BRF2Q9HAW0 419 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ZBTB20Q9HC78 741 aaPredicted RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 YARS2Q9Y2Z4 477 aaKnown RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 CHD2O14647 1828 aaKnown RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 SCO2O43819 266 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 GGT2P36268 569 aa7.39□□□□□ -1.23
NEDD9-204ENST00000448183 RPL35P42766 123 aaKnown RBP7.39□□□□□ -1.23
NEDD9-204ENST00000448183 ARRB1P49407 418 aaPredicted RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms