RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 LMF2Q9BU23 707 aaKnown RBP11.47□□□□□ -0.57
USP40-205ENST00000430158 SAR1AQ9NR31 198 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 SLC6A13Q9NSD5 602 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 GPATCH2Q9NW75 528 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 TAS2R9Q9NYW1 312 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 PRODH2Q9UF12 536 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 BCAP29Q9UHQ4 241 aa11.47□□□□□ -0.57
USP40-205ENST00000430158 EMC8O43402 210 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 SNX3O60493 162 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 DPM1O60762 260 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 SHOX2O60902 331 aaPredicted RBP11.46□□□□□ -0.57
USP40-205ENST00000430158 SORBS2O94875 1100 aaKnown RBP11.46□□□□□ -0.57
USP40-205ENST00000430158 FBXO45P0C2W1 286 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 SOX3P41225 446 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 CDKN2CP42773 168 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 MAN2A2P49641 1150 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 SSR4P51571 173 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 NR0B1P51843 470 aaKnown RBP11.46□□□□□ -0.57
USP40-205ENST00000430158 CORO7P57737 925 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 DCAF7P61962 342 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 C6orf163Q5TEZ5 329 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 SLC6A19Q695T7 634 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 PIGWQ7Z7B1 504 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 ZADH2Q8N4Q0 377 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 NUP43Q8NFH3 380 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 SFXN5Q8TD22 340 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 VPS33AQ96AX1 596 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 SCMH1Q96GD3 660 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 C16orf58Q96GQ5 468 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 LCORQ96JN0 433 aaPredicted RBP11.46□□□□□ -0.57
USP40-205ENST00000430158 OR52E6Q96RD3 313 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 GAL3ST4Q96RP7 486 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 ELAC2Q9BQ52 826 aaKnown RBP11.46□□□□□ -0.57
USP40-205ENST00000430158 INPP5KQ9BT40 448 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 SERHL2Q9H4I8 314 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 ANKRD10Q9NXR5 420 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 CFL2Q9Y281 166 aa11.46□□□□□ -0.57
USP40-205ENST00000430158 GTF3C1Q12789 2109 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 FASNP49327 2511 aaKnown RBP11.45□□□□□ -0.58
USP40-205ENST00000430158 FRG2CA6NGY1 282 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 FCHO1O14526 889 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 ACOX3O15254 700 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 COQ9O75208 318 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 ERN1O75460 977 aaKnown RBP11.45□□□□□ -0.58
USP40-205ENST00000430158 NKX2-2O95096 273 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 ACP2P11117 423 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 CAPN3P20807 821 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 CCT3P49368 545 aaKnown RBP11.45□□□□□ -0.58
USP40-205ENST00000430158 ARG2P78540 354 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 GAB1Q13480 694 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 OR1C1Q15619 314 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 SPINK14Q6IE38 97 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 MFSD12Q6NUT3 480 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 MDGA2Q7Z553 956 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 SPATA21Q7Z572 469 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 WDR53Q7Z5U6 358 aaPredicted RBP11.45□□□□□ -0.58
USP40-205ENST00000430158 GPALPP1Q8IXQ4 340 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 CLEC4FQ8N1N0 589 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 OR4N2Q8NGD1 307 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 RNF138Q8WVD3 245 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 TM9SF4Q92544 642 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 GTF2H4Q92759 462 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 PNPLA2Q96AD5 504 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 HSPBAP1Q96EW2 488 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 MAGED4Q96JG8 741 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 RILPQ96NA2 401 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 ZBTB18Q99592 522 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 UTP23Q9BRU9 249 aaKnown RBP11.45□□□□□ -0.58
USP40-205ENST00000430158 PROK2Q9HC23 129 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 NEUROD4Q9HD90 331 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 DDX18Q9NVP1 670 aaKnown RBP11.45□□□□□ -0.58
USP40-205ENST00000430158 ADAM21Q9UKJ8 722 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 TRIM33Q9UPN9 1127 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 B3GNT3Q9Y2A9 372 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 PCDHGB6Q9Y5F9 930 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 MED12Q93074 2177 aa11.45□□□□□ -0.58
USP40-205ENST00000430158 HELZ2Q9BYK8 2649 aaKnown RBP11.44□□□□□ -0.58
USP40-205ENST00000430158 HIVEP3Q5T1R4 2406 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 TRBV5-3A0A0A0MS03 114 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 DYTNA2CJ06 578 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 TTC36A6NLP5 189 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 ADAM10O14672 748 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 TSPAN2O60636 221 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 CPSF4O95639 269 aaKnown RBP11.44□□□□□ -0.58
USP40-205ENST00000430158 PRB1P04280 392 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 HMGN2P05204 90 aaKnown RBP11.44□□□□□ -0.58
USP40-205ENST00000430158 ABCB1P08183 1280 aaPredicted RBP11.44□□□□□ -0.58
USP40-205ENST00000430158 ZCCHC18P0CG32 403 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 NAGAP17050 411 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 NCF2P19878 526 aaPredicted RBP11.44□□□□□ -0.58
USP40-205ENST00000430158 ABCD3P28288 659 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 GPC1P35052 558 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 CYB561P49447 251 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 MVDP53602 400 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 STX1BP61266 288 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 KLRB1Q12918 225 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 NTRK2Q16620 822 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 TIGD2Q4W5G0 525 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 AGKQ53H12 422 aa11.44□□□□□ -0.58
USP40-205ENST00000430158 SAXO2Q658L1 398 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms