RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 MRGPREQ86SM8 312 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 POGLUT1Q8NBL1 392 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 OR6M1Q8NGM8 313 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 OR8D4Q8NGM9 314 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 LYSMD1Q96S90 227 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 CXorf36Q9H7Y0 433 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 SDHAF2Q9NX18 166 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 STOX2Q9P2F5 926 aaPredicted RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 ZNF624Q9P2J8 865 aaPredicted RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 A0A1B0GVC2 190 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 MYADML2A6NDP7 307 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 A6NIN4 97 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 SLC38A8A6NNN8 435 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 CACNB4O00305 520 aaPredicted RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 COCHO43405 550 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 NFATC1O95644 943 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 HRGP04196 525 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 GALP22466 123 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 UQCRC2P22695 453 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 MMP12P39900 470 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 OR1G1P47890 313 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 SMIM11AP58511 58 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 FZD5Q13467 585 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 ZMYND11Q15326 602 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 ENTPD8Q5MY95 495 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 HACD4Q5VWC8 232 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 TNFAIP8L2Q6P589 184 aaPredicted RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 LYPD4Q6UWN0 246 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 CFAP77Q6ZQR2 320 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 TECPR1Q7Z6L1 1165 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 SERINC5Q86VE9 423 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 COMTD1Q86VU5 262 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 KLHDC8AQ8IYD2 350 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 OR4K5Q8NGD3 323 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 WDR48Q8TAF3 677 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 ADAMTS14Q8WXS8 1223 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 PLD4Q96BZ4 506 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 ALG14Q96F25 216 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 COQ10AQ96MF6 247 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.09□□□□□ -0.79
USP54-204ENST00000422491 GPBP1L1Q9HC44 474 aaPredicted RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 MYNNQ9NPC7 610 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 MAN2C1Q9NTJ4 1040 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 C5orf58C9J3I9 102 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 SYN3O14994 580 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 EFCAB14O75071 495 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 SOCS5O75159 536 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 DRD2P14416 443 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 NPR2P20594 1047 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 GIFP27352 417 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 NUP62P37198 522 aaPredicted RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 RPL3P39023 403 aaKnown RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 MTNR1BP49286 362 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 EPHA4P54764 986 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 TAS2R50P59544 299 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 RPL6Q02878 288 aaKnown RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 UAP1L1Q3KQV9 507 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 CCSMST1Q4G0I0 132 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 C1orf94Q6P1W5 598 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 SEZ6L2Q6UXD5 910 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 RSPO2Q6UXX9 243 aaPredicted RBP10.09□□□□□ -0.79
USP54-204ENST00000422491 FGD2Q7Z6J4 655 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 UXS1Q8NBZ7 420 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 MORN4Q8NDC4 146 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 OR4F15Q8NGB8 312 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 GIMAP1Q8WWP7 306 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 PTP4A1Q93096 173 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 SAP130Q9H0E3 1048 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 EGLN3Q9H6Z9 239 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 BRD9Q9H8M2 597 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 PRM3Q9NNZ6 103 aa10.09□□□□□ -0.79
USP54-204ENST00000422491 CKAP5Q14008 2032 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 DOCK6Q96HP0 2047 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 SAP18O00422 153 aaKnown RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 SOX30O94993 753 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 ATP1B2P14415 290 aaPredicted RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 CSKP41240 450 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 CSNK1DP48730 415 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 RAG2P55895 527 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 DUSP4Q13115 394 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 ZNF791Q3KP31 576 aaPredicted RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 IER5LQ5T953 404 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 MED27Q6P2C8 311 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 SLCO4C1Q6ZQN7 724 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 OVCH2Q7RTZ1 564 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 IQCHQ86VS3 1027 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 MMP21Q8N119 569 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 ZNF687Q8N1G0 1237 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 FTMTQ8N4E7 242 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 SAMD12Q8N8I0 201 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 TRPV1Q8NER1 839 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 BEST4Q8NFU0 473 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 WFDC5Q8TCV5 224 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 ERMAPQ96PL5 475 aaPredicted RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 SECISBP2Q96T21 854 aaKnown RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 C2orf49Q9BVC5 232 aaPredicted RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 SLC6A16Q9GZN6 736 aa10.08□□□□□ -0.8
USP54-204ENST00000422491 ADARB2Q9NS39 739 aaKnown RBP10.08□□□□□ -0.8
USP54-204ENST00000422491 ZFR2Q9UPR6 939 aaKnown RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms