RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 CLMPQ9H6B4 373 aa13.51□□□□□ -0.25
LIMS1-206ENST00000414829 LIN28AQ9H9Z2 209 aaKnown RBP13.51□□□□□ -0.25
LIMS1-206ENST00000414829 FOLH1BQ9HBA9 442 aa13.51□□□□□ -0.25
LIMS1-206ENST00000414829 HHATLQ9HCP6 504 aa13.51□□□□□ -0.25
LIMS1-206ENST00000414829 TMEM45AQ9NWC5 275 aa13.51□□□□□ -0.25
LIMS1-206ENST00000414829 ZIM2Q9NZV7 527 aa13.51□□□□□ -0.25
LIMS1-206ENST00000414829 TRIM33Q9UPN9 1127 aa13.51□□□□□ -0.25
LIMS1-206ENST00000414829 GPR55Q9Y2T6 319 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-206ENST00000414829 SCN2AQ99250 2005 aa13.51□□□□□ -0.25
LIMS1-206ENST00000414829 ANKRD33BA6NCL7 494 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 CFLARO15519 480 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 EMC8O43402 210 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 PEX1O43933 1283 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 HS6ST1O60243 411 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 EDF1O60869 148 aaKnown RBP13.5□□□□□ -0.25
LIMS1-206ENST00000414829 PPM1BO75688 479 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 LAMP1P11279 417 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 EDN3P14138 238 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 IL12BP29460 328 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 S100A3P33764 101 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 BNC2Q6ZN30 1099 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-206ENST00000414829 C16orf47Q6ZP98 133 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-206ENST00000414829 MIER2Q8N344 545 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 AMER2Q8N7J2 671 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 TMCO6Q96DC7 493 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 SDR39U1Q9NRG7 319 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-206ENST00000414829 ASF1BQ9NVP2 202 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 BOKQ9UMX3 212 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-206ENST00000414829 SNX8Q9Y5X2 465 aa13.5□□□□□ -0.25
LIMS1-206ENST00000414829 CPAMD8Q8IZJ3 1885 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 PRSS51A0A1B0GVH4 220 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 OR6C70A6NIJ9 312 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ZNF195O14628 629 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ANKRD28O15084 1053 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 SNX4O95219 450 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 KCNH1O95259 989 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 IL6P05231 212 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ALDOCP09972 364 aaKnown RBP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 CNR1P21554 472 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 PTGER1P34995 402 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 MRPL19P49406 292 aaKnown RBP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 MEOX1P50221 254 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 AQP5P55064 265 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 KCNJ2P63252 427 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ALDH6A1Q02252 535 aaKnown RBP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 DUSP8Q13202 625 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 SNTA1Q13424 505 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 DECR1Q16698 335 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 SLC9B1Q4ZJI4 515 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 KRTCAP3Q53RY4 240 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 TMEM81Q6P7N7 255 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 LYPD8Q6UX82 237 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 MSANTD1Q6ZTZ1 278 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 NUP54Q7Z3B4 507 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 MAVSQ7Z434 540 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 MDGA2Q7Z553 956 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 SLC22A16Q86VW1 577 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ZNF227Q86WZ6 799 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 SLC44A2Q8IWA5 706 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 TRIML2Q8N7C3 387 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ZFP62Q8NB50 900 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ST6GALNAC3Q8NDV1 305 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 NUP43Q8NFH3 380 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 OMA1Q96E52 524 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 MAGED4Q96JG8 741 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 SLX1AQ9BQ83 275 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 LMF2Q9BU23 707 aaKnown RBP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 RABEP2Q9H5N1 569 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 CCDC134Q9H6E4 229 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ZCCHC3Q9NUD5 404 aaKnown RBP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 B4GALT7Q9UBV7 327 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 FAF1Q9UNN5 650 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-206ENST00000414829 DTX4Q9Y2E6 619 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 PCDHGB3Q9Y5G1 929 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 GPR45Q9Y5Y3 372 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 DOCK10Q96BY6 2186 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 ZNF462Q96JM2 2506 aa13.49□□□□□ -0.25
LIMS1-206ENST00000414829 TFECO14948 347 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-206ENST00000414829 SLC22A3O75751 556 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 C6orf47O95873 294 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 LCN1P31025 176 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 SOAT1P35610 550 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 SOX18P35713 384 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 IDH3AP50213 366 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 CDK9P50750 372 aaKnown RBP13.48□□□□□ -0.25
LIMS1-206ENST00000414829 ANXA11P50995 505 aaKnown RBP13.48□□□□□ -0.25
LIMS1-206ENST00000414829 TXNL4AP83876 142 aaKnown RBP13.48□□□□□ -0.25
LIMS1-206ENST00000414829 PLGLB1Q02325 96 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 RBPJQ06330 500 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 TP53BP2Q13625 1128 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 NNATQ16517 81 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 PRSS53Q2L4Q9 553 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 FAM174BQ3ZCQ3 159 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 PRR30Q53SZ7 412 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-206ENST00000414829 COLEC12Q5KU26 742 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-206ENST00000414829 SULF2Q8IWU5 870 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 OR2M7Q8NG81 312 aa13.48□□□□□ -0.25
LIMS1-206ENST00000414829 OR10G3Q8NGC4 313 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms