RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SACM1LQ9NTJ5 587 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 KRBOX1C9JBD0 128 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM11P17152 192 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 TSSK4Q6SA08 328 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 BBS10Q8TAM1 723 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CYP2W1Q8TAV3 490 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 TSSK2Q96PF2 358 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 GATA5Q9BWX5 397 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 OR51J1Q9H342 316 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CREBZFQ9NS37 354 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 SOBPA7XYQ1 873 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 MEP1BQ16820 701 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 OR4F3Q6IEY1 312 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 LRRTM4Q86VH4 590 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 GKN2Q86XP6 184 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 C1orf52Q8N6N3 182 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CMTM2Q8TAZ6 248 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CHFRQ96EP1 664 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ACOT7O00154 380 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 RAB11AP62491 216 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF763Q0D2J5 394 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 PLA2G7Q13093 441 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 OGFOD3Q6PK18 319 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 PIGWQ7Z7B1 504 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 SUMF1Q8NBK3 374 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ELP4Q96EB1 424 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 NLKQ9UBE8 527 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 A0A1W2PPW3 197 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 VSTM2BA6NLU5 285 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 MEIS3P2A8K0S8 358 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ITM2AO43736 263 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 PENKP01210 267 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CT45A6P0DMU7 189 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CT45A5P0DMU8 189 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CT45A7P0DMV0 189 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CT45A8P0DMV1 189 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CT45A9P0DMV2 189 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CRYBB1P53674 252 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 GTF2BQ00403 316 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 NPRL3Q12980 569 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 DUSP7Q16829 419 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF718Q3SXZ3 478 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CT45A2Q5DJT8 189 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CT45A1Q5HYN5 189 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 HGSNATQ68CP4 663 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM71Q6P5X7 295 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CT45A3Q8NHU0 189 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 M1APQ8TC57 530 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 SORCS2Q96PQ0 1159 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 CARS2Q9HA77 564 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 FAM118AQ9NWS6 357 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 HLA-AP01891 365 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 FHP07954 510 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 PYCR1P32322 319 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 WASP42768 502 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 GSK3BP49841 420 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 POU4F3Q15319 338 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 BPHLQ86WA6 291 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 MICU1Q9BPX6 476 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 FKBPLQ9UIM3 349 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ANKUB1A6NFN9 424 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 TSPAN6O43657 245 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 MITFO75030 526 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 PTGER4P35408 488 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 SPPL2BQ8TCT7 592 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 FKRPQ9H9S5 495 aa12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 LIN28AQ9H9Z2 209 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-204ENST00000413716 ADRA1BP35368 520 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 HOXA1P49639 335 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 DGKQP52824 942 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 SUMO1P63165 101 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 ARNTL2Q8WYA1 636 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 NOL4LQ96MY1 436 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 CCM2Q9BSQ5 444 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 STRADBQ9C0K7 418 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 RHCGQ9UBD6 479 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 HES2Q9Y543 173 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 NEMP2A6NFY4 417 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 COTL1Q14019 142 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 SFRP4Q6FHJ7 346 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 THOC6Q86W42 341 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM151BQ8IW70 566 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 FCF1Q9Y324 198 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 A0A087WZY1 265 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 A0A1W2PQL4 384 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 SYT7O43581 403 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 LILRB3O75022 631 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 SDC3O75056 442 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 C6orf47O95873 294 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 DHRS4L1P0CG22 281 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 DRD5P21918 477 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 ADARB1P78563 741 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 OR10K2Q6IF99 312 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 SLC5A11Q8WWX8 675 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 FAM124BQ9H5Z6 455 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 CKMT1AP12532 417 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 RHBDL3P58872 404 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 C10orf62Q5T681 223 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 RAET1LQ5VY80 246 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 KDM8Q8N371 416 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms