RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SLCO2A1Q92959 643 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 RAD51AP1Q96B01 352 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 LRRC39Q96DD0 335 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 MMABQ96EY8 250 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 SNF8Q96H20 258 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 RMDN2Q96LZ7 410 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 SERPINB12Q96P63 405 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 OR6C1Q96RD1 312 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 WDR77Q9BQA1 342 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 HGH1Q9BTY7 390 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 ULBP3Q9BZM4 244 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 DDX47Q9H0S4 455 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 OR52A5Q9H2C5 316 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 TFB2MQ9H5Q4 396 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 PPANQ9NQ55 473 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 TREX1Q9NSU2 369 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 C20orf96Q9NUD7 363 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 OR6C2Q9NZP2 312 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 TMEM9Q9P0T7 183 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 LNPEPQ9UIQ6 1025 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 LSM4Q9Y4Z0 139 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 FAM169AQ9Y6X4 670 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 DSPP15924 2871 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 FAM208BQ5VWN6 2430 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 BPTFQ12830 3046 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 RAD51CO43502 376 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 RAD1O60671 282 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 SEC14L2O76054 403 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 HBQ1P09105 142 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 ITGB6P18564 788 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 NELFEP18615 380 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 POLR2CP19387 275 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 NMBRP28336 390 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 CENPAP49450 140 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 COMPP49747 757 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 CSE1LP55060 971 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 ADARP55265 1226 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 GFERP55789 205 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 ID2Q02363 134 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 ANKRD20A4Q4UJ75 823 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 SPANXN3Q5MJ09 141 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 GKAP1Q5VSY0 366 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 ZNF470Q6ECI4 717 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 DCUN1D3Q8IWE4 304 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 SLC22A15Q8IZD6 547 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 GJC3Q8NFK1 279 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 OR52E1Q8NGJ3 308 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 OR5K2Q8NHB8 316 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 CFAP61Q8NHU2 1237 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 DENND1AQ8TEH3 1009 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 ZG16BQ96DA0 208 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 ZNF778Q96MU6 729 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 WDR83Q9BRX9 315 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 C1QTNF5Q9BXJ0 243 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 RAB17Q9H0T7 212 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 GPN2Q9H9Y4 310 aaPredicted RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 FAM114A2Q9NRY5 505 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 OCIAD1Q9NX40 245 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 UTP6Q9NYH9 597 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 HEY2Q9UBP5 337 aa5.97□□□□□ -1.45
USP40-202ENST00000409945 UTP11Q9Y3A2 253 aaKnown RBP5.97□□□□□ -1.45
USP40-202ENST00000409945 SLC5A10A0PJK1 596 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 FAM90A8PA6NJQ4 464 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 GOLGA8KD6RF30 607 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 OR1I1O60431 355 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 AVILO75366 819 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 VPS26AO75436 327 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 STK17BO94768 372 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 CATP04040 527 aaKnown RBP5.96□□□□□ -1.46
USP40-202ENST00000409945 KLK3P07288 261 aaPredicted RBP5.96□□□□□ -1.46
USP40-202ENST00000409945 FAM90A13PP0C7W8 464 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 FAM90A24PP0C7X0 464 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 PRSS56P0CW18 603 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 SFTPCP11686 197 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 PORP16435 677 aaPredicted RBP5.96□□□□□ -1.46
USP40-202ENST00000409945 TNFRSF1BP20333 461 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 CERS1P27544 350 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 PDHA2P29803 388 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 ATP5DP30049 168 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 HSD17B2P37059 387 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 ETV5P41161 510 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 LEPRP48357 1165 aaKnown RBP5.96□□□□□ -1.46
USP40-202ENST00000409945 RGS4P49798 205 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 RAB28P51157 221 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 F2RL1P55085 397 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 RUNX2Q13950 521 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 IRF3Q14653 427 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 KIR2DS3Q14952 304 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 TYSND1Q2T9J0 566 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 ESCO2Q56NI9 601 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 ATG9BQ674R7 924 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 DUS1LQ6P1R4 473 aaKnown RBP5.96□□□□□ -1.46
USP40-202ENST00000409945 ZNF534Q76KX8 674 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 SZRD1Q7Z422 152 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 TMEM135Q86UB9 458 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 KCNMB4Q86W47 210 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 ZFAND4Q86XD8 727 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 TMEM126BQ8IUX1 230 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 NAT8LQ8N9F0 302 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms