RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 RAB39AQ14964 217 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 ADIPOR2Q86V24 386 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 TAAR8Q969N4 342 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 DHRS1Q96LJ7 313 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 ZFP3Q96NJ6 502 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 TSSK3Q96PN8 268 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 EIF2B3Q9NR50 452 aaKnown RBP6.93□□□□□ -1.3
SCN9A-202ENST00000409435 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.93□□□□□ -1.3
SCN9A-202ENST00000409435 CSNK1G3Q9Y6M4 447 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 RGPD4Q7Z3J3 1758 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 A6NLC8 198 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 BBIP1A8MTZ0 92 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 C17orf105B2RV13 164 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 NIPSNAP2O75323 286 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 TSPAN15O95858 294 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 ANXA3P12429 323 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 CSNK1DP48730 415 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 OGDHQ02218 1023 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 SPOCK1Q08629 439 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF460Q14592 562 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM52BQ4KMG9 183 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 ALG10Q5BKT4 473 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 DCST1Q5T197 706 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 C3orf33Q6P1S2 294 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 CORO6Q6QEF8 472 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 CLDN19Q8N6F1 224 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 ENDOVQ8N8Q3 282 aaKnown RBP6.93□□□□□ -1.3
SCN9A-202ENST00000409435 FCRL4Q96PJ5 515 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 C12orf65Q9H3J6 166 aaKnown RBP6.93□□□□□ -1.3
SCN9A-202ENST00000409435 CDCP1Q9H5V8 836 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 PAQR5Q9NXK6 330 aaPredicted RBP6.93□□□□□ -1.3
SCN9A-202ENST00000409435 SLC22A14Q9Y267 594 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 MAP4K5Q9Y4K4 846 aa6.93□□□□□ -1.3
SCN9A-202ENST00000409435 A0A1B0GX78 115 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 FOXE1O00358 373 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PLRG1O43660 514 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 WNT11O96014 354 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PGCP20142 388 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PLA2G5P39877 138 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 MXD1Q05195 221 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 GALNT1Q10472 559 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 MAP4K2Q12851 820 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 UBAP2LQ14157 1087 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 RPE65Q16518 533 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ASTE1Q2TB18 679 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SLC9B1Q4ZJI4 515 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 GUSBP11Q6P575 273 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 AHSA2Q719I0 299 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PIWIL4Q7Z3Z4 852 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF611Q8N823 705 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 KIAA1958Q8N8K9 716 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR4C15Q8NGM1 316 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR1J4Q8NGS1 313 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TSEN15Q8WW01 171 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 UFD1Q92890 307 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF707Q96C28 371 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF160Q9HCG1 818 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 A0A0G2JMP0 313 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 AGAP5A6NIR3 686 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZBTB42B2RXF5 422 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 AZIN1O14977 448 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SMAD6O43541 496 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ATE1O95260 518 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 CD247P20963 164 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 FDXRP22570 491 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TNFRSF8P28908 595 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SLC1A2P43004 574 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SGSHP51688 502 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 XKP51811 444 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 NR0B1P51843 470 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ERVK-25P63136 954 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 LIPEQ05469 1076 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 CD47Q08722 323 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 GALNT2Q10471 571 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SPIN4Q56A73 249 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ALG10BQ5I7T1 473 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 KIAA0930Q6ICG6 404 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ETFRF1Q6IPR1 90 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TSPAN33Q86UF1 283 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR4M2Q8NGB6 313 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 THAP4Q8WY91 577 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 RCN3Q96D15 328 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 CCDC120Q96HB5 630 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 IL17FQ96PD4 163 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ERVK-6Q9BXR3 956 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ACTRT3Q9BYD9 372 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 DEFB127Q9H1M4 99 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ERVK-18Q9QC07 812 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TEX51A0A1B0GUA7 166 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 LMO7DNF2Z398 122 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 F8W036 122 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 K7EPK0 472 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 LCMT2O60294 686 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ARHGEF15O94989 841 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 UCHL1P09936 223 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 EBLN1P0CF75 366 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OPRD1P41143 372 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 POU6F2P78424 691 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 BLOC1S1P78537 153 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM41BQ5BJD5 291 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms