RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SPTBP11277 2137 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 LOC102723532A0A0G2JNH3 316 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CLDN24A6NM45 220 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 FAM170BA6NMN3 283 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 MPZL2O60487 215 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CD2P06729 351 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ACP5P13686 325 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CSF2RAP15509 400 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CDH11P55287 796 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 SMIM11AP58511 58 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 TBCEQ15813 527 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF367Q7RTV3 350 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 OR4K5Q8NGD3 323 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ADAMTS15Q8TE58 950 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 GLYATL1Q969I3 302 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 YIPF6Q96EC8 236 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 DNAJA3Q96EY1 480 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 NELL2Q99435 816 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 KLF16Q9BXK1 252 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 PAK6Q9NQU5 681 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 MRPL15Q9P015 296 aaKnown RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF639Q9UID6 485 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 M0R082 166 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CDC40O60508 579 aaKnown RBP eCLIP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 NTHL1P78549 312 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 GALK2Q01415 458 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 KCNC4Q03721 635 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ILF3Q12906 894 aaKnown RBP eCLIP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 NDUFAF6Q330K2 333 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 TIGD3Q6B0B8 471 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 SLC30A6Q6NXT4 461 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 IL20RBQ6UXL0 311 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 VWA5B2Q8N398 1253 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 WDSUB1Q8N9V3 476 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 BEST4Q8NFU0 473 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 POP5Q969H6 163 aaKnown RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 TIFAQ96CG3 184 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 USB1Q9BQ65 265 aaKnown RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 EFCAB11Q9BUY7 163 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ADAP2Q9NPF8 381 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 TMEM189-UBE2V1I3L0A0 370 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 M0R036 132 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ERI3O43414 337 aaKnown RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 SOCS5O75159 536 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 VNN2O95498 520 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF250P15622 560 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 GPX2P18283 190 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 IDSP22304 550 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 HOXA9P31269 272 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 GPR4P46093 362 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 VSX2P58304 361 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 RAB2AP61019 212 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 S100A12P80511 92 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 BCL2A1Q16548 175 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 SYPL1Q16563 259 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF385BQ569K4 471 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 SLC30A8Q8IWU4 369 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 LINC00469Q8N7U9 141 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CXorf40AQ8TE69 158 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF480Q8WV37 535 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ASB15Q8WXK1 588 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 C1QTNF3Q9BXJ4 246 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ACSL5Q9ULC5 683 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 PDCD5O14737 125 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 GPX5O75715 221 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 TXNDC12O95881 172 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 SERPINA3P01011 423 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 SOD2P04179 222 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 C1GALT1C1LP0DN25 315 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 PSMB5P28074 263 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 PFN3P60673 137 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 FAM209BQ5JX69 171 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 LAIR2Q6ISS4 152 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 RNF44Q7L0R7 432 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 FAM124AQ86V42 546 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 KREMEN2Q8NCW0 462 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 NLGN4YQ8NFZ3 816 aaPredicted RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 OR52N2Q8NGI0 321 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 OR10G6Q8NH81 332 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 BBS10Q8TAM1 723 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 NEIL3Q8TAT5 605 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 ZBED6CLQ96FA7 236 aaPredicted RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 RC3H2Q9HBD1 1191 aaKnown RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 KCNK6Q9Y257 313 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 MRPS23Q9Y3D9 190 aaKnown RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 CCDC85CA6NKD9 419 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 YY2O15391 372 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 PI15O43692 258 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 PRKRAO75569 313 aaKnown RBP11.3□□□□□ -0.6
HMGB1-206ENST00000405805 RASGRP1O95267 797 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 IFNGR2P38484 337 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 STAT5AP42229 794 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 CCR4P51679 360 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 VEZF1Q14119 521 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 KRBOX4Q5JUW0 171 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 PLEKHS1Q5SXH7 462 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 IRAK1BP1Q5VVH5 260 aa11.3□□□□□ -0.6
HMGB1-206ENST00000405805 PAQR7Q86WK9 346 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms