RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 CLEC7AQ9BXN2 247 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 PITPNM3Q9BZ71 974 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 BARHL1Q9BZE3 327 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 ELOVL4Q9GZR5 314 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 LHX5Q9H2C1 402 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 SMYD3Q9H7B4 428 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 NHEJ1Q9H9Q4 299 aaPredicted RBP4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 MARCH5Q9NX47 278 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 PRDM4Q9UKN5 801 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 ADAM28Q9UKQ2 775 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 CDH9Q9ULB4 789 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 PPP1R3CQ9UQK1 317 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 NSG2Q9Y328 171 aa4.28□□□□□ -1.72
HMGB3P19-201ENST00000403971 TRAV18A0A075B6X5 111 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 OOEPA6NGQ2 149 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 BTNL10A8MVZ5 291 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 SLCO1B7G3V0H7 640 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 PI4K2BG5E9Z4 385 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 RTCAO00442 366 aaKnown RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 PLEKP08567 350 aaPredicted RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 H2AFZP0C0S5 128 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 PNMA6AP0CW24 399 aaPredicted RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 ELAVL4P26378 380 aaKnown RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 BRCC3P46736 316 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 RPL34P49207 117 aaKnown RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 SMARCB1Q12824 385 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 IQCCQ4KMZ1 466 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 ZNF542PQ5EBM4 170 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 SPOUT1Q5T280 376 aaKnown RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 WSCD1Q658N2 575 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 ZNF770Q6IQ21 691 aaPredicted RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 NHLRC1Q6VVB1 395 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 SCARA5Q6ZMJ2 495 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 H2AFVQ71UI9 128 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 FCRLAQ7L513 359 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 PHLDB2Q86SQ0 1253 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 PRUNE1Q86TP1 453 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 ZSCAN30Q86W11 494 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 MEX3DQ86XN8 651 aaKnown RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 TUSC5Q8IXB3 177 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 LSMEM2Q8N112 164 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 THEM5Q8N1Q8 247 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 SLC39A11Q8N1S5 342 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 FAM89BQ8N5H3 189 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 COLGALT1Q8NBJ5 622 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 TMEM35BQ8NCS4 154 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 OR2T6Q8NHC8 308 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 FIBINQ8TAL6 211 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 FAM218AQ96MZ4 157 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 HNRNPABQ99729 332 aaKnown RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 SYT15Q9BQS2 421 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 IARS2Q9NSE4 1012 aaKnown RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 SPG21Q9NZD8 308 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 KLHL8Q9P2G9 620 aaPredicted RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 PRG3Q9Y2Y8 225 aaPredicted RBP4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 DOCK4Q8N1I0 1966 aa4.27□□□□□ -1.73
HMGB3P19-201ENST00000403971 COL4A4P53420 1690 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 NUP205Q92621 2012 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 C5orf67F2Z3F1 127 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 I3L4J1 428 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 ZNF263O14978 683 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 KRT86O43790 486 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 ZFAND5O76080 213 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 DUS4LO95620 317 aaKnown RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 CALB1P05937 261 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 PRKAR1AP10644 381 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 GOT1P17174 413 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 CYP2A7P20853 494 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 MT3P25713 68 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 LMO2P25791 158 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 MSNP26038 577 aaKnown RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 PIK3R1P27986 724 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 MAGEA1P43355 309 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 NSFP46459 744 aaKnown RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 OR3A2P47893 321 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 NPBWR1P48145 328 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 HADHBP55084 474 aaKnown RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 CLDN17P56750 224 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 GSCP56915 257 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 SLC8A3P57103 927 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 OR1D5P58170 312 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 DCDC1P59894 354 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 GFPT1Q06210 699 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 TRA2AQ13595 282 aaKnown RBP eCLIP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 CDH18Q13634 790 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 MTF1Q14872 753 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 SLMAPQ14BN4 828 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 SHHQ15465 462 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 TYSND1Q2T9J0 566 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 CFAP221Q4G0U5 840 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 CCDC122Q5T0U0 273 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 SLC8B1Q6J4K2 584 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 PAQR9Q6ZVX9 377 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 GPR141Q7Z602 305 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 ACOT1Q86TX2 421 aa4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 PHF13Q86YI8 300 aaPredicted RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 RNF10Q8N5U6 811 aaKnown RBP4.26□□□□□ -1.73
HMGB3P19-201ENST00000403971 TCEANCQ8N8B7 351 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms