RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 OR10A3P58181 314 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 BNC1Q01954 994 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 OCLNQ16625 522 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 LY6G5CQ5SRR4 150 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 IDNKQ5T6J7 187 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 SIGIRRQ6IA17 410 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 SYT9Q86SS6 491 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 MORN4Q8NDC4 146 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 RAET1EQ8TD07 263 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 SMPDL3AQ92484 453 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 FOXE1O00358 373 aaPredicted RBP19.75■□□□□ 0.75
CTCF-202ENST00000401394 DDCP20711 480 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 PNLIPRP1P54315 467 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 FUT5Q11128 374 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 FCN2Q15485 313 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 VASNQ6EMK4 673 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 BEST4Q8NFU0 473 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 SPRYD4Q8WW59 207 aaPredicted RBP19.75■□□□□ 0.75
CTCF-202ENST00000401394 CXorf40BQ96DE9 158 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 EFCAB11Q9BUY7 163 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 SGPP1Q9BX95 441 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 POLDIP3Q9BY77 421 aaKnown RBP19.75■□□□□ 0.75
CTCF-202ENST00000401394 WNT6Q9Y6F9 365 aa19.75■□□□□ 0.75
CTCF-202ENST00000401394 A0A1W2PPK0 400 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 SOCS6O14544 535 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 GRM6O15303 877 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 LCMT2O60294 686 aaKnown RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 NNMTP40261 264 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 POLR2LP62875 67 aaKnown RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.74■□□□□ 0.75
CTCF-202ENST00000401394 DGLUCYQ7Z3D6 616 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 SFTPA1Q8IWL2 248 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 SHISA5Q8N114 240 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 OR8H1Q8NGG4 311 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 UFD1Q92890 307 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 ZSCAN5AQ9BUG6 496 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 MRPL9Q9BYD2 267 aaKnown RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 MAPRE3Q9UPY8 281 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 SCN3AQ9NY46 2000 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 A0A0B4J203 849 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 GABRPO00591 440 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 TGM5O43548 720 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 PIP5K1CO60331 668 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 POP7O75817 140 aaKnown RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 ZNF155Q12901 538 aaPredicted RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 PARS2Q7L3T8 475 aaKnown RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 VRK2Q86Y07 508 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 TBC1D19Q8N5T2 526 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 MAGEB10Q96LZ2 347 aaPredicted RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 NARFLQ9H6Q4 476 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 ZCCHC3Q9NUD5 404 aaKnown RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 SLC23A2Q9UGH3 650 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 ENOPH1Q9UHY7 261 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 SCN2AQ99250 2005 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 TRHRP34981 398 aaPredicted RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 BSGP35613 385 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 EVX1P49640 407 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 SREBF2Q12772 1141 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 PRAMEF14Q5SWL7 426 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 PRAMEF13Q5VWM6 474 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 LHX8Q68G74 356 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 ADCK2Q7Z695 626 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 OR4Q3Q8NH05 313 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 C17orf62Q9BQA9 187 aa19.74■□□□□ 0.75
CTCF-202ENST00000401394 ZFR2Q9UPR6 939 aaKnown RBP19.74■□□□□ 0.75
CTCF-202ENST00000401394 SSTR2P30874 369 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 INPP1P49441 399 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 EFNB1P98172 346 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 CDK5Q00535 292 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 RAET1GQ6H3X3 334 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 HSDL2Q6YN16 418 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 NKAIN4Q8IVV8 208 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 OR11H4Q8NGC9 324 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 KAT2AQ92830 837 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 TMEM43Q9BTV4 400 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 A4GALTQ9NPC4 353 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 A0A0A6YYJ9 748 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 ARRDC5A6NEK1 342 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 INMT-MINDY4F8WBC2 141 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 MMP20O60882 483 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 ERP29P30040 261 aaKnown RBP19.73■□□□□ 0.75
CTCF-202ENST00000401394 IFNA8P32881 189 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 TRIM23P36406 574 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 SLC1A3P43003 542 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 TMEM91Q6ZNR0 172 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 ZDHHC5Q9C0B5 715 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 GLIPR2Q9H4G4 154 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 KLHL31Q9H511 634 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 EXTL2Q9UBQ6 330 aa19.73■□□□□ 0.75
CTCF-202ENST00000401394 LILRB5O75023 590 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 SYN1P17600 705 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 CXCL3P19876 107 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 ZNF33BQ06732 778 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 FZD5Q13467 585 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 ESPNLQ6ZVH7 1005 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 KRT74Q7RTS7 529 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 HOMEZQ8IX15 550 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 CCDC116Q8IYX3 515 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 ARHGAP9Q9BRR9 750 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 XKR8Q9H6D3 395 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms