RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 ZNHIT1O43257 154 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 CTIFO43310 598 aaKnown RBP12.79□□□□□ -0.36
SEC13-204ENST00000397099 TYROBPO43914 113 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 TBX19O60806 448 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 ATP6AP2O75787 350 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 SNRPB2P08579 225 aaKnown RBP12.79□□□□□ -0.36
SEC13-204ENST00000397099 MYZAPP0CAP1 466 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 PCSK2P16519 638 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 ACVR2AP27037 513 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 GCKP35557 465 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 FBXW4P57775 412 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 EXOSC7Q15024 291 aaKnown RBP12.79□□□□□ -0.36
SEC13-204ENST00000397099 KRT71Q3SY84 523 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 GXYLT1Q4G148 440 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 PRAMEF20Q5VT98 475 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 CLEC6AQ6EIG7 209 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 TICAM1Q8IUC6 712 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 MCEMP1Q8IX19 187 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 NATD1Q8N6N6 113 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 OR5M3Q8NGP4 307 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 OR9A2Q8NGT5 310 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 ZFP28Q8NHY6 868 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 CDC26Q8NHZ8 85 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 DOK4Q8TEW6 326 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 CA5BP1Q8WTZ4 195 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 RND1Q92730 232 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 MTERF3Q96E29 417 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 OMA1Q96E52 524 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 FCRL1Q96LA6 429 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 PPP3R2Q96LZ3 170 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 COL21A1Q96P44 957 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 ZIM3Q96PE6 472 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 ITPAQ9BY32 194 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 C12orf65Q9H3J6 166 aaKnown RBP12.79□□□□□ -0.36
SEC13-204ENST00000397099 EXO5Q9H790 373 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 PROK2Q9HC23 129 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 ACAD8Q9UKU7 415 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 DNAJC15Q9Y5T4 150 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 ACTL7BQ9Y614 415 aa12.79□□□□□ -0.36
SEC13-204ENST00000397099 CACNA1CQ13936 2221 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 NPIPA2E9PIF3 369 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 NPIPA3F8WFD2 350 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 ADAM10O14672 748 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 BIRC5O15392 142 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 ERN1O75460 977 aaKnown RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 HPNP05981 417 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 PRF1P14222 555 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 COX6B1P14854 86 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 GDF1P27539 372 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 CHRNB4P30926 498 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 NCBP2P52298 156 aaKnown RBP eCLIP12.78□□□□□ -0.36
SEC13-204ENST00000397099 PNLIPRP2P54317 469 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 MRPS35P82673 323 aaKnown RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 ZNHIT3Q15649 155 aaPredicted RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 LTB4RQ15722 352 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 CYP27C1Q4G0S4 372 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 ARL13AQ5H913 290 aaPredicted RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 LRIG3Q6UXM1 1119 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 C3P1Q6ZMU1 363 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 R3HCC1LQ7Z5L2 792 aaKnown RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 PM20D2Q8IYS1 436 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 NEIL3Q8TAT5 605 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 ZBED6CLQ96FA7 236 aaPredicted RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 SLC35A4Q96G79 324 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 JSRP1Q96MG2 331 aaPredicted RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 VSTM2LQ96N03 204 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 C3orf14Q9HBI5 128 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 C19orf53Q9UNZ5 99 aaPredicted RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 POLR3HQ9Y535 204 aaPredicted RBP12.78□□□□□ -0.36
SEC13-204ENST00000397099 CACNA1DQ01668 2161 aa12.78□□□□□ -0.36
SEC13-204ENST00000397099 LRRC3CA6NJW4 275 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 LSM1O15116 133 aaKnown RBP12.77□□□□□ -0.37
SEC13-204ENST00000397099 PDPK1O15530 556 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 SPAG7O75391 227 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 BPGMP07738 259 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 IL12BP29460 328 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 PSMD4P55036 377 aaKnown RBP12.77□□□□□ -0.37
SEC13-204ENST00000397099 DUSP2Q05923 314 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 ZNF844Q08AG5 666 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 DUSP8Q13202 625 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 MAD2L1Q13257 205 aaPredicted RBP12.77□□□□□ -0.37
SEC13-204ENST00000397099 VPS26BQ4G0F5 336 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 SH2D4BQ5SQS7 431 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 TIGD3Q6B0B8 471 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 B3GNT6Q6ZMB0 384 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 Q6ZSR9 355 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 DDIASQ8IXT1 998 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 OR1J4Q8NGS1 313 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 CEP70Q8NHQ1 597 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 PPP1R14CQ8TAE6 165 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 TWIST2Q8WVJ9 160 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 KAT2AQ92830 837 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 HGDQ93099 445 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 NTNG2Q96CW9 530 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 AMDHD1Q96NU7 426 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 OSBPL11Q9BXB4 747 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 UBQLN3Q9H347 655 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 REEP4Q9H6H4 257 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 FOLH1BQ9HBA9 442 aa12.77□□□□□ -0.37
SEC13-204ENST00000397099 SLC24A3Q9HC58 644 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms