RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SLC38A5Q8WUX1 472 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 C12orf43Q96C57 262 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 PEX11GQ96HA9 241 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF578Q96N58 590 aaPredicted RBP17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 GFM1Q96RP9 751 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF347Q96SE7 839 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 APOL4Q9BPW4 351 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 SLC7A5P2Q9GIP4 190 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 ADNPQ9H2P0 1102 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 CACYBPQ9HB71 228 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 PCDHGB3Q9Y5G1 929 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 SNX5Q9Y5X3 404 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 MUC3AQ02505 3323 aa17.04■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF749O43361 778 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 LDB3O75112 727 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 COQ9O75208 318 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 BCHEP06276 602 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 GP1BAP07359 652 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 CTSBP07858 339 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 OR12D1P0DN82 309 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ITGA2P17301 1181 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ELK4P28324 431 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 AQP1P29972 269 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 PCBP3P57721 371 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 RPS26P62854 115 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 SNRPNP63162 240 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 HPCAP84074 193 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 DUSP2Q05923 314 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 CD47Q08722 323 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 LASP1Q14847 261 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 C16orf72Q14CZ0 275 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 C11orf91Q3C1V1 193 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 IFI44LQ53G44 452 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF628Q5EBL2 1059 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 TTLL10Q6ZVT0 673 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 MED25Q71SY5 747 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ARHGAP22Q7Z5H3 698 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 BPHLQ86WA6 291 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ARMC8Q8IUR7 673 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 OR2I1PQ8NGU4 316 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 OR51Q1Q8NH59 317 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ADAMTS15Q8TE58 950 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 XAGE5Q8WWM1 108 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 KAT2AQ92830 837 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ZNF501Q96CX3 271 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 RBM18Q96H35 190 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 TPD52L3Q96J77 140 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 BCL7BQ9BQE9 202 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ATXN7L1Q9ULK2 861 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 C19orf53Q9UNZ5 99 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 MMACHCQ9Y4U1 282 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 PCDHGB1Q9Y5G3 927 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 UNC13CQ8NB66 2214 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 TTC28Q96AY4 2481 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 A0A1B0GX78 115 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 PLOD3O60568 738 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 DNAJB6O75190 326 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 LDOC1O95751 146 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 HBQ1P09105 142 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 FOLR1P15328 257 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ALAS2P22557 587 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 PIGAP37287 484 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 CSNK2BP67870 215 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 DCTN2Q13561 401 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 DSG2Q14126 1118 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 FAHD1Q6P587 224 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 HS3ST5Q8IZT8 346 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 TMEM19Q96HH6 336 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 C7orf34Q96L11 122 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 BTBD2Q9BX70 525 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 TMEM121BQ9BXQ6 578 aaPredicted RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 ABCG2Q9UNQ0 655 aa17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 SAMHD1Q9Y3Z3 626 aaKnown RBP17.03■□□□□ 0.32
CCDC88C-203ENST00000389856 IGHV5-10-1A0A0J9YXX1 117 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 A0A1W2PQM1 296 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 A8MVJ9 347 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 FAM227AF5H4B4 570 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 H3BMH7 237 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 ADAMDEC1O15204 470 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 B4GALT2O60909 372 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 ITIH1P19827 911 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 FBLP22087 321 aaKnown RBP17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 GALNSP34059 522 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 XCR1P46094 333 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 LTB4RQ15722 352 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 PLA2G2CQ5R387 149 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 CDC73Q6P1J9 531 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 CROCCP3Q8IVE0 287 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 OR7G2Q8NG99 324 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 RAB2BQ8WUD1 216 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 GEMIN6Q8WXD5 167 aaKnown RBP17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 RAB8BQ92930 207 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 ANKRD9Q96BM1 317 aaPredicted RBP17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 DGAT2Q96PD7 388 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 COL25A1Q9BXS0 654 aaPredicted RBP17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 ZNF304Q9HCX3 659 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 BCL2L10Q9HD36 194 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 CCNB1IP1Q9NPC3 277 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 VNN3Q9NY84 501 aa17.02■□□□□ 0.31
CCDC88C-203ENST00000389856 RARRES3Q9UL19 164 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms