RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 IL17REQ8NFR9 667 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 BEST4Q8NFU0 473 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 LINS1Q8NG48 757 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR11H6Q8NGC7 330 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 OR52K1Q8NGK4 314 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ZNF563Q8TA94 476 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ITFG1Q8TB96 612 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 CACNG8Q8WXS5 425 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 SNRNP40Q96DI7 357 aaKnown RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 MTERF3Q96E29 417 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 PIWIL1Q96J94 861 aaKnown RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 PGLYRP3Q96LB9 341 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 BMFQ96LC9 184 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 C4orf45Q96LM5 186 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 AIFM3Q96NN9 605 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ODF3Q96PU9 254 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 SEC22CQ9BRL7 303 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ADPGKQ9BRR6 497 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 DCUN1D5Q9BTE7 237 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 MIS12Q9H081 205 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 MINDY3Q9H8M7 445 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 FAM204AQ9H8W3 233 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ELL3Q9HB65 397 aaPredicted RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 RAVER2Q9HCJ3 691 aaKnown RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 DIABLOQ9NR28 239 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 GAGE2DQ9UEU5 116 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 UBQLN2Q9UHD9 624 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ELF5Q9UKW6 265 aaPredicted RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 STUB1Q9UNE7 303 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 SOX21Q9Y651 276 aaPredicted RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 WDR97A6NE52 1622 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ARHGEF5Q12774 1597 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 NCKAP5O14513 1909 aa-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 RPAP1Q9BWH6 1393 aaPredicted RBP-1.34□□□□□ -2.62
RNU6-540P-201ENST00000384622 ARAP3Q8WWN8 1544 aa-1.35□□□□□ -2.62
RNU6-540P-201ENST00000384622 CHD3Q12873 2000 aaKnown RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 MCM3APO60318 1980 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 IGKV2-40A0A087WW87 121 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 TRABD2BA6NFA1 517 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 ZNF729A6NN14 1252 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 RASGRF2O14827 1237 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 B4GAT1O43505 415 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 ASNA1O43681 348 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 GLSO94925 669 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 CELF2O95319 508 aaKnown RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 IGKV2D-40P01614 121 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 CCDC166P0CW27 439 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 PGA4P0DJD7 388 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 PGA3P0DJD8 388 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 PGA5P0DJD9 388 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 VPREB1P12018 145 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 RCC1P18754 421 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 UQCRC2P22695 453 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 CHMP24386 653 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 SLC6A6P31641 620 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 FCGR2BP31994 310 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 FCGR2CP31995 323 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 OTX2P32243 289 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 ABCD1P33897 745 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 SFTPDP35247 375 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 SSTR5P35346 364 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 RAD52P43351 418 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 ALDH3B1P43353 468 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 PRR3P79522 188 aaKnown RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 QRFPP83859 136 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 DEFA6Q01524 100 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 LCP2Q13094 533 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 TRIM29Q14134 588 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 DRAP1Q14919 205 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 GUSBP1Q15486 140 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 CNPY1Q3B7I2 92 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 SPINK9Q5DT21 86 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 SLC22A10Q63ZE4 541 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 TXNDC8Q6A555 127 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 FAM109BQ6ICB4 259 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 NANOGP8Q6NSW7 305 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 PPP4R4Q6NUP7 873 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 SLC30A6Q6NXT4 461 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 MOB1BQ7L9L4 216 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 NUP54Q7Z3B4 507 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 SDCCAG8Q86SQ7 713 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 ANKRD13AQ8IZ07 590 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 DYNAPQ8N1N2 210 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 TSPYL6Q8N831 410 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 Q8N9G6 341 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 TRIML1Q8N9V2 468 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 SUMF2Q8NBJ7 301 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 DUSP18Q8NEJ0 188 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 OR2L3Q8NG85 312 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 IPO4Q8TEX9 1081 aaKnown RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 PATE1Q8WXA2 126 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 DUS3LQ96G46 650 aaKnown RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 FAM210BQ96KR6 192 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 ZNF317Q96PQ6 595 aaPredicted RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 RPS6KC1Q96S38 1066 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 TM2D3Q9BRN9 247 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 PELOQ9BRX2 385 aaKnown RBP-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 RTKNQ9BST9 563 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 OR51J1Q9H342 316 aa-1.35□□□□□ -2.63
RNU6-540P-201ENST00000384622 CDC42EP4Q9H3Q1 356 aaKnown RBP-1.35□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms