RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 WASH2PQ6VEQ5 465 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 CFAP77Q6ZQR2 320 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 DEFB128Q7Z7B8 93 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 ZNF431Q8TF32 576 aaPredicted RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 IL17FQ96PD4 163 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 ARHGAP9Q9BRR9 750 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 SAP130Q9H0E3 1048 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 SCML1Q9UN30 329 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 PPIL1Q9Y3C6 166 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 PRAMEF27A3QJZ7 478 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 FOXE1O00358 373 aaPredicted RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 GABRPO00591 440 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 PDPK1O15530 556 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 ATG13O75143 517 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 MTRF1O75570 445 aaKnown RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 C1orf105O95561 183 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 RPL3P39023 403 aaKnown RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 RPL6Q02878 288 aaKnown RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 TMEM115Q12893 351 aaPredicted RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 OR6T1Q8NGN1 323 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 RAET1EQ8TD07 263 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 OTULINQ96BN8 352 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 NEURL3Q96EH8 262 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 YIPF4Q9BSR8 244 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 DPCDQ9BVM2 203 aaPredicted RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 C1QTNF7Q9BXJ2 289 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 RNF32Q9H0A6 362 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.91□□□□□ -0.342e-7■■□□□ 11.4
USP49-201ENST00000373006 MTG2Q9H4K7 406 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 RNF186Q9NXI6 227 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 CNIH4Q9P003 139 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 TRPC4Q9UBN4 977 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 ZMAT5Q9UDW3 170 aaKnown RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 PLAGL1Q9UM63 463 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 XIRP2A4UGR9 3374 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 ZNF106Q9H2Y7 1883 aaKnown RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 TMEM129A0AVI4 362 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 SLC5A10A0PJK1 596 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 POP4O95707 220 aaKnown RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 PTNP21246 168 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 TAGLNQ01995 201 aaKnown RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 RAB40BQ12829 278 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 RNASE12Q5GAN4 147 aaKnown RBP12.91□□□□□ -0.34
USP49-201ENST00000373006 KRT74Q7RTS7 529 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 ADGRF3Q8IZF5 1079 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 BMPERQ8N8U9 685 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 IL17RCQ8NAC3 791 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 FIBINQ8TAL6 211 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 MED28Q9H204 178 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 BRD7Q9NPI1 651 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 SLC35C2Q9NQQ7 365 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 NCKAP1Q9Y2A7 1128 aa12.91□□□□□ -0.34
USP49-201ENST00000373006 PRODHO43272 600 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 ACADMP11310 421 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 FGF9P31371 208 aaPredicted RBP12.9□□□□□ -0.34
USP49-201ENST00000373006 NUDT1P36639 197 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 SRP9P49458 86 aaKnown RBP12.9□□□□□ -0.34
USP49-201ENST00000373006 PRKAG1P54619 331 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 CDK5Q00535 292 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 ZDHHC20Q5W0Z9 365 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 RAET1GQ6H3X3 334 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 ZNF607Q96SK3 696 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 FUZQ9BT04 418 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 EFCAB11Q9BUY7 163 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 QRSL1Q9H0R6 528 aaKnown RBP12.9□□□□□ -0.34
USP49-201ENST00000373006 SERHL2Q9H4I8 314 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 BEX1Q9HBH7 125 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 A4GALTQ9NPC4 353 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 MAN2C1Q9NTJ4 1040 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 PLXND1Q9Y4D7 1925 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 A0A0G2JN53 185 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 TRDV1A0A1B0GX56 115 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 FRS3O43559 492 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 CHP2O43745 196 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 RFPL3O75679 317 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 SLC22A5O76082 557 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 TFPIP10646 304 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 IL32P24001 234 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 ATP6V1E1P36543 226 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 BUD31P41223 144 aaPredicted RBP12.9□□□□□ -0.34
USP49-201ENST00000373006 SLC1A3P43003 542 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 EFNB1P98172 346 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 TAP2Q03519 686 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 TCTN1Q2MV58 587 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 GDPD4Q6W3E5 623 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 NR2C2APQ86WQ0 139 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 OR11H4Q8NGC9 324 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 OR8D4Q8NGM9 314 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 DNAJA4Q8WW22 397 aaPredicted RBP12.9□□□□□ -0.34
USP49-201ENST00000373006 SLC5A11Q8WWX8 675 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 FGF11Q92914 225 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 F2RL3Q96RI0 385 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 MS4A7Q9GZW8 240 aaPredicted RBP12.9□□□□□ -0.34
USP49-201ENST00000373006 ABCG5Q9H222 651 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 B3GNT2Q9NY97 397 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 LSM7Q9UK45 103 aaKnown RBP12.9□□□□□ -0.34
USP49-201ENST00000373006 SLC9A8Q9Y2E8 581 aa12.9□□□□□ -0.34
USP49-201ENST00000373006 MRPS7Q9Y2R9 242 aaKnown RBP12.9□□□□□ -0.34
USP49-201ENST00000373006 DNAH14Q0VDD8 3507 aa12.9□□□□□ -0.35
USP49-201ENST00000373006 NR2F1P10589 423 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms