RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 DCLRE1CQ96SD1 692 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SECISBP2Q96T21 854 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 NPAP1Q9NZP6 1156 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 COPZ2Q9P299 210 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 PEX16Q9Y5Y5 336 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TNRC6BQ9UPQ9 1833 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 FAM25EA8MYX2 175 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TLR4O00206 839 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 STSP08842 583 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TSPAN19P0C672 248 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SELLP14151 372 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 ITPKAP23677 461 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SOX6P35712 828 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CAV3P56539 151 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 RAB14P61106 215 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TBPL1P62380 186 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 PRKCDQ05655 676 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 AKIRIN2Q53H80 203 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 ZNF691Q5VV52 312 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 LIPJQ5W064 366 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CAPN13Q6MZZ7 669 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TSSK4Q6SA08 328 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 HDDC2Q7Z4H3 204 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CDYL2Q8N8U2 506 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 WDR36Q8NI36 951 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 NELL1Q92832 810 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TMEM203Q969S6 136 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 AURKBQ96GD4 344 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CAMK1GQ96NX5 476 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 THUMPD3Q9BV44 507 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 SLC22A4Q9H015 551 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TCEAL2Q9H3H9 227 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 KIR3DX1Q9H7L2 352 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 GPR83Q9NYM4 423 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 MKLN1Q9UL63 735 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TMEM5Q9Y2B1 443 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 GRIP1Q9Y3R0 1128 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CCL27Q9Y4X3 112 aa9.53□□□□□ -0.88
SYNE1-203ENST00000354674 CFAP20Q9Y6A4 193 aaKnown RBP9.53□□□□□ -0.88
SYNE1-203ENST00000354674 TECTAO75443 2155 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 STMND1H3BQB6 276 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 FFAR3O14843 346 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 GPR42O15529 346 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 SGCEO43556 437 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 VPS4BO75351 444 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 PDE9AO76083 593 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 IGFBP5P24593 272 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 IDH2P48735 452 aaKnown RBP9.52□□□□□ -0.89
SYNE1-203ENST00000354674 FNTBP49356 437 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 SCRN3Q0VDG4 424 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF79Q15937 498 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 TMEM88Q6PEY1 159 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 RD3Q7Z3Z2 195 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 C1orf210Q8IVY1 113 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 PHACTR4Q8IZ21 702 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 METTL6Q8TCB7 284 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 EMC3Q9P0I2 261 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 ZNF624Q9P2J8 865 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-203ENST00000354674 C3orf18Q9UK00 162 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 SLC22A7Q9Y694 548 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 CACNG2Q9Y698 323 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 FAM240BA0A1B0GVZ2 78 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 FAM74A7A6NL05 159 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 OR52A4PA6NMU1 304 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 GTPBP1O00178 669 aaKnown RBP9.52□□□□□ -0.89
SYNE1-203ENST00000354674 SLC30A4O14863 429 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 SCAMP1O15126 338 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 CDK1P06493 297 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 F3P13726 295 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 MAOBP27338 520 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 ACTR1BP42025 376 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 MAN2A2P49641 1150 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 BLKP51451 505 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 NXPH1P58417 271 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 ACTR1AP61163 376 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 CRYZQ08257 329 aaKnown RBP9.52□□□□□ -0.89
SYNE1-203ENST00000354674 ILF3Q12906 894 aaKnown RBP eCLIP9.52□□□□□ -0.89
SYNE1-203ENST00000354674 FAM74A3Q4VXF1 159 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 LCTLQ6UWM7 567 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 TRIM46Q7Z4K8 759 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 TMEFF1Q8IYR6 380 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 PM20D2Q8IYS1 436 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 C9orf62Q8N4C0 152 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 OR11H4Q8NGC9 324 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 FAM162AQ96A26 154 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 DIRAS2Q96HU8 199 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 ZBTB18Q99592 522 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 SPSB2Q99619 263 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 RAB11FIP5Q9BXF6 653 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 GSDMCQ9BYG8 508 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 SPNS1Q9H2V7 528 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 PLCL2Q9UPR0 1127 aa9.52□□□□□ -0.89
SYNE1-203ENST00000354674 NOSIPQ9Y314 301 aaKnown RBP9.52□□□□□ -0.89
SYNE1-203ENST00000354674 A0A1B0GVC2 190 aa9.51□□□□□ -0.89
SYNE1-203ENST00000354674 A0A1W2PPV9 198 aa9.51□□□□□ -0.89
SYNE1-203ENST00000354674 OR2A25A4D2G3 310 aa9.51□□□□□ -0.89
SYNE1-203ENST00000354674 A6NIN4 97 aa9.51□□□□□ -0.89
SYNE1-203ENST00000354674 LY86O95711 162 aa9.51□□□□□ -0.89
SYNE1-203ENST00000354674 C1QBP02746 253 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms