RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 APOBEC4Q8WW27 367 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 ARHGAP9Q9BRR9 750 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 SERHL2Q9H4I8 314 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 FANCFQ9NPI8 374 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 MRPL15Q9P015 296 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 GMEB2Q9UKD1 530 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 PLXND1Q9Y4D7 1925 aa12.7□□□□□ -0.38
CCDC88C-201ENST00000331194 C7orf66A4D0T2 115 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 NPIPB15A6NHN6 443 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 M0R233 179 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 ARAFP10398 606 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 AHCYP23526 432 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 FGF9P31371 208 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 GPR85P60893 370 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 COX10Q12887 443 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 NUMA1Q14980 2115 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 LRFN4Q6PJG9 635 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 METAP1DQ6UB28 335 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 ATRAIDQ6UW56 229 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 RSPO2Q6UXX9 243 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 IQCHQ86VS3 1027 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 HORMAD2Q8N7B1 307 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 DBF4BQ8NFT6 615 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 WFDC5Q8TCV5 224 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 GTF3C2Q8WUA4 911 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 PIGKQ92643 395 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 TMEM38AQ9H6F2 299 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 NT5DC2Q9H857 520 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 FLVCR2Q9UPI3 526 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 MGAT4BQ9UQ53 548 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 TRDV1A0A1B0GX56 115 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 OR5K4A6NMS3 321 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 ANKRD34CP0C6C1 535 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 NUP62P37198 522 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC6A11P48066 632 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 TAS2R50P59544 299 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 SFRP5Q5T4F7 317 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 VASNQ6EMK4 673 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 KIAA1161Q6NSJ0 714 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 ESPNLQ6ZVH7 1005 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 METTL3Q86U44 580 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 KLBQ86Z14 1044 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 ZFP3Q96NJ6 502 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 DDOQ99489 341 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 REEP4Q9H6H4 257 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 IFT22Q9H7X7 185 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 C5AR2Q9P296 337 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 ANGPT4Q9Y264 503 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 TMEM5Q9Y2B1 443 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 MAB21L2Q9Y586 359 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 TRPV2Q9Y5S1 764 aa12.69□□□□□ -0.38
CCDC88C-201ENST00000331194 A0A0B4J203 849 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 hCG_1807616A0A1W2PRN6 198 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC22A23A1A5C7 686 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ANKDD1BA6NHY2 528 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 NPIPB8E9PQR5 432 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 CLDN11O75508 207 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 GATBO75879 557 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 MT-ND4P03905 459 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 IFNA16P05015 189 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 CORO1AP31146 461 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 TIA1P31483 386 aaKnown RBP eCLIP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 NSG1P42857 185 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 MTNR1AP48039 350 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ARHGDIBP52566 201 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 KIAA1024LP59773 190 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 RING1Q06587 406 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC36A2Q495M3 483 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 CTXN3Q4LDR2 81 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 CD200R1LQ6Q8B3 271 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 OXR1Q8N573 874 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 OR8K5Q8NH50 307 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SMG7Q92540 1137 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 POLDIP3Q9BY77 421 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 BRD7Q9NPI1 651 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 RNF186Q9NXI6 227 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 KIAA0100Q14667 2235 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 MTMR11A4FU01 709 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 MANSC4A6NHS7 340 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 IFNA14P01570 189 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 PEPDP12955 493 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SHC1P29353 583 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ASMTP46597 345 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC11A2P49281 568 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ACLYP53396 1101 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SIM1P81133 766 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF155Q12901 538 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 CDKN3Q16667 212 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF630Q2M218 657 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 GDF6Q6KF10 455 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 MZT2AQ6P582 158 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 C17orf107Q6ZR85 190 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SIAH3Q8IW03 269 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 COQ8AQ8NI60 647 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SPRYD4Q8WW59 207 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 PPCDCQ96CD2 204 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SGTBQ96EQ0 304 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 TMEM19Q96HH6 336 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SECISBP2Q96T21 854 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 CACNG6Q9BXT2 260 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms