RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NAT6Q93015 286 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 KCNN3Q9UGI6 736 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 EBF1Q9UH73 591 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 ACSL6Q9UKU0 697 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 PCDHGA7Q9Y5G6 932 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 A6NLC8 198 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 H3BSH0 61 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 ONECUT3O60422 494 aaPredicted RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 FOXD2O60548 495 aaPredicted RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 BMP2P12643 396 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 CRABP1P29762 137 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 ARF3P61204 181 aaPredicted RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 ARF1P84077 181 aaKnown RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 CMPK2Q5EBM0 449 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 TTLL10Q6ZVT0 673 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 SPATC1Q76KD6 591 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 OR13C3Q8NGS6 347 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 GPR150Q8NGU9 434 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 CHPT1Q8WUD6 406 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 ARL5BQ96KC2 179 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 IL17FQ96PD4 163 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 TTTY10Q9BZA0 68 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 HSPB11Q9Y547 144 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 A0A0J9YY10 115 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 UCHL1P09936 223 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 AK4P27144 223 aaPredicted RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 TUBB3Q13509 450 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 TMEM53Q6P2H8 277 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 TMEM107Q6UX40 140 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.19■□□□□ 0.5
UPF1-201ENST00000262803 NEIL3Q8TAT5 605 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 DIO2Q92813 273 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 KLHL13Q9P2N7 655 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 GPR160Q9UJ42 338 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 SARDHQ9UL12 918 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 MYH15Q9Y2K3 1946 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 CER1O95813 267 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 STSP08842 583 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 MAGEA8P43361 318 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 DAP3P51398 398 aaKnown RBP18.19■□□□□ 0.5
UPF1-201ENST00000262803 IST1P53990 364 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 DPPA4Q7L190 304 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 ZNF350Q9GZX5 532 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 POLE4Q9NR33 117 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 ABCG2Q9UNQ0 655 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 HIF3AQ9Y2N7 669 aa18.19■□□□□ 0.5
UPF1-201ENST00000262803 SLC1A7O00341 560 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 BPIP17213 487 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 AGTR1P30556 359 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 C18orf21Q32NC0 220 aaPredicted RBP18.18■□□□□ 0.5
UPF1-201ENST00000262803 TMEM69Q5SWH9 247 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 BCL2L15Q5TBC7 163 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 KLHDC8AQ8IYD2 350 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 ZNF431Q8TF32 576 aaPredicted RBP18.18■□□□□ 0.5
UPF1-201ENST00000262803 BCL7BQ9BQE9 202 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 SYT3Q9BQG1 590 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 MYH3P11055 1940 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 AMY2BP19961 511 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 MYF6P23409 242 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 CRYZQ08257 329 aaKnown RBP18.18■□□□□ 0.5
UPF1-201ENST00000262803 LSAMPQ13449 338 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 METTL27Q8N6F8 245 aaPredicted RBP18.18■□□□□ 0.5
UPF1-201ENST00000262803 HUS1BQ8NHY5 278 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 F2RL3Q96RI0 385 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 COPZ2Q9P299 210 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 SLC6A5Q9Y345 797 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 KCNK5O95279 499 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 CDK2P24941 298 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 ACBD7Q8N6N7 88 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 PNPLA1Q8N8W4 532 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 COQ8AQ8NI60 647 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 KLHL15Q96M94 604 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 BOCQ9BWV1 1114 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 PCP4L1A6NKN8 68 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 MRPL3P09001 348 aaKnown RBP18.18■□□□□ 0.5
UPF1-201ENST00000262803 DDCP20711 480 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 RBPJQ06330 500 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 ZNF181Q2M3W8 571 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 CCDC120Q96HB5 630 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 BIRC8Q96P09 236 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 CPEB1Q9BZB8 566 aaKnown RBP18.18■□□□□ 0.5
UPF1-201ENST00000262803 ATG5Q9H1Y0 275 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 EXTL2Q9UBQ6 330 aa18.18■□□□□ 0.5
UPF1-201ENST00000262803 INMT-MINDY4F8WBC2 141 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 GTF2F2P13984 249 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 ACTBP60709 375 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 ACTG1P63261 375 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 BDH1Q02338 343 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 NSDHLQ15738 373 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 MORN1Q5T089 497 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 KCTD9Q7L273 389 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 LRRTM3Q86VH5 581 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 APCDD1Q8J025 514 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 RAB39BQ96DA2 213 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 FUNDC2Q9BWH2 189 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 SDR39U1Q9NRG7 319 aaPredicted RBP18.17■□□□□ 0.5
UPF1-201ENST00000262803 ABRACLQ9P1F3 81 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 LATO43561 262 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 RP2O75695 350 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 SORBS2O94875 1100 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms