RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PRKNO60260 465 aaPredicted RBP18.75■□□□□ 0.59
CLN3-250ENST00000636839 LRP3O75074 770 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 PGM3O95394 542 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 NR2F1P10589 423 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 DCDP81605 110 aaKnown RBP18.75■□□□□ 0.59
CLN3-250ENST00000636839 CBLL1Q75N03 491 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 PTPMT1Q8WUK0 201 aaPredicted RBP18.75■□□□□ 0.59
CLN3-250ENST00000636839 HSH2DQ96JZ2 352 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 TREX2Q9BQ50 279 aaPredicted RBP18.75■□□□□ 0.59
CLN3-250ENST00000636839 CNPPD1Q9BV87 410 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 SOX17Q9H6I2 414 aaPredicted RBP18.75■□□□□ 0.59
CLN3-250ENST00000636839 MKKSQ9NPJ1 570 aaPredicted RBP18.75■□□□□ 0.59
CLN3-250ENST00000636839 FBXO8Q9NRD0 319 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 OLAHQ9NV23 265 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 C6orf203Q9P0P8 240 aaPredicted RBP18.75■□□□□ 0.59
CLN3-250ENST00000636839 ZNF639Q9UID6 485 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 DTX4Q9Y2E6 619 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 LOXL2Q9Y4K0 774 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 CCDC88CQ9P219 2028 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 RIF1Q5UIP0 2472 aaKnown RBP18.74■□□□□ 0.59
CLN3-250ENST00000636839 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.74■□□□□ 0.59
CLN3-250ENST00000636839 C5orf58C9J3I9 102 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 MEN1O00255 615 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 ZIC2O95409 532 aaPredicted RBP18.74■□□□□ 0.59
CLN3-250ENST00000636839 TNNI3P19429 210 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 NSDHLQ15738 373 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 ISXQ2M1V0 245 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 FAM98BQ52LJ0 330 aaKnown RBP18.74■□□□□ 0.59
CLN3-250ENST00000636839 CDCP2Q5VXM1 449 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 LANCL3Q6ZV70 420 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 ERMP1Q7Z2K6 904 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 KBTBD2Q8IY47 623 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 LGI4Q8N135 537 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 ZG16BQ96DA0 208 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 CMKLR1Q99788 373 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 QRSL1Q9H0R6 528 aaKnown RBP18.74■□□□□ 0.59
CLN3-250ENST00000636839 ERVK-19Q9WJR5 959 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 ANGPT4Q9Y264 503 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 B3GALT1Q9Y5Z6 326 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 ZNF292O60281 2723 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 ZGLP1P0C6A0 271 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 RAP2AP10114 183 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 MAPK10P53779 464 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 CHRNB3Q05901 458 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.74■□□□□ 0.59
CLN3-250ENST00000636839 MLIPQ5VWP3 458 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 QSOX2Q6ZRP7 698 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 MED25Q71SY5 747 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 CCDC80Q76M96 950 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 EIF3MQ7L2H7 374 aaKnown RBP18.74■□□□□ 0.59
CLN3-250ENST00000636839 ADAMTS15Q8TE58 950 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 PIK3R3Q92569 461 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 EFHD1Q9BUP0 239 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 UGT2B28Q9BY64 529 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 AGPAT4Q9NRZ5 378 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 P2RX2Q9UBL9 471 aa18.74■□□□□ 0.59
CLN3-250ENST00000636839 C17orf105B2RV13 164 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 FCMRO60667 390 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 CSO75390 466 aaKnown RBP18.73■□□□□ 0.59
CLN3-250ENST00000636839 EMDP50402 254 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 CLCN2P51788 898 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 E2F1Q01094 437 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 DUSP7Q16829 419 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 CCNJQ5T5M9 372 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 CDC73Q6P1J9 531 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 MARCH9Q86YJ5 346 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 ULBP3Q9BZM4 244 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 SAMD4AQ9UPU9 718 aaKnown RBP18.73■□□□□ 0.59
CLN3-250ENST00000636839 MMACHCQ9Y4U1 282 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 IGHV3-20A0A0C4DH32 117 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 SPAARA0A1B0GVQ0 90 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 PRAMEF25A6NGN4 478 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 HNRNPRO43390 633 aaKnown RBP18.73■□□□□ 0.59
CLN3-250ENST00000636839 DIRAS1O95057 198 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 H6PDO95479 791 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 MT-CO3P00414 261 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 CLPSP04118 112 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 GCKP35557 465 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 GPAT3Q53EU6 434 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 CRB2Q5IJ48 1285 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 FKBP9P1Q75LS8 142 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 RAB11FIP2Q7L804 512 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 EID3Q8N140 333 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 FBXO34Q9NWN3 711 aa18.73■□□□□ 0.59
CLN3-250ENST00000636839 IFT80Q9P2H3 777 aaPredicted RBP18.73■□□□□ 0.59
CLN3-250ENST00000636839 IGLV3-12A0A075B6K2 115 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 TCRBV16S1A1N1A0A5B0 115 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 A8MVJ9 347 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 hCG_2039718K7EN88 272 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 SUV39H1O43463 412 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 CPNE3O75131 537 aaKnown RBP18.72■□□□□ 0.59
CLN3-250ENST00000636839 OR1E2P47887 323 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 SELENOWP63302 87 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 KCNJ10P78508 379 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 PPP1R8Q12972 351 aaKnown RBP18.72■□□□□ 0.59
CLN3-250ENST00000636839 ILKQ13418 452 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 SERTAD2Q14140 314 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 EXOSC6Q5RKV6 272 aaKnown RBP18.72■□□□□ 0.59
CLN3-250ENST00000636839 OVCH1Q7RTY7 1134 aa18.72■□□□□ 0.59
CLN3-250ENST00000636839 BPHLQ86WA6 291 aaPredicted RBP18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms