RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ADAP2Q9NPF8 381 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 PNO1Q9NRX1 252 aaKnown RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.75□□□□□ -0.53
PNKP-217ENST00000625216 TEX10Q9NXF1 929 aaPredicted RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 MS4A12Q9NXJ0 267 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 SEC14L3Q9UDX4 400 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 LEF1Q9UJU2 399 aaPredicted RBP11.75□□□□□ -0.53
PNKP-217ENST00000625216 NDUFAF1Q9Y375 327 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 CLDN16Q9Y5I7 305 aa11.75□□□□□ -0.53
PNKP-217ENST00000625216 ARHGAP10A1A4S6 786 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 CYSRT1A8MQ03 144 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 GYG2O15488 501 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 MAN1A2O60476 641 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 NEURL1O76050 574 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 ZFAND5O76080 213 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 PGRP06401 933 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 RNF224P0DH78 156 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 COX7A2P14406 83 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 S100A3P33764 101 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 HPCAL1P37235 193 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 HLCSP50747 726 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 RASSF2P50749 326 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 GPR143P51810 404 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 MNAT1P51948 309 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 HNRNPFP52597 415 aaKnown RBP11.74□□□□□ -0.53
PNKP-217ENST00000625216 WNT3P56703 355 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 C2orf80Q0P641 193 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 STX4Q12846 297 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 PRSS53Q2L4Q9 553 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 MMEL1Q495T6 779 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 DNAL1Q4LDG9 190 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 COQ5Q5HYK3 327 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 OR4F3Q6IEY1 312 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 C8orf82Q6P1X6 216 aaPredicted RBP11.74□□□□□ -0.53
PNKP-217ENST00000625216 HACD2Q6Y1H2 254 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 IKBIPQ70UQ0 350 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 CAMKMTQ7Z624 323 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 ZCCHC7Q8N3Z6 543 aaKnown RBP11.74□□□□□ -0.53
PNKP-217ENST00000625216 FAM47BQ8NA70 645 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 MORN4Q8NDC4 146 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 TMEM52Q8NDY8 209 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 THAP3Q8WTV1 239 aaPredicted RBP11.74□□□□□ -0.53
PNKP-217ENST00000625216 TMEM125Q96AQ2 219 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 ALOXE3Q9BYJ1 711 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 REEP4Q9H6H4 257 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 EFCAB1Q9HAE3 211 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 ANKRD10Q9NXR5 420 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 ATP6V1HQ9UI12 483 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 RRP15Q9Y3B9 282 aaKnown RBP11.74□□□□□ -0.53
PNKP-217ENST00000625216 CLCA3PQ9Y6N3 262 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 NAV2Q8IVL1 2488 aa11.74□□□□□ -0.53
PNKP-217ENST00000625216 TRBV11-1A0A0K0K1C0 115 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 GSC2O15499 205 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 SCN2BO60939 215 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 SLC25A12O75746 678 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 IFNA16P05015 189 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 IL6P05231 212 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 KRT16P08779 473 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 FAM58BPP0C7Q3 252 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 LAMP1P11279 417 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 NQO1P15559 274 aaKnown RBP11.73□□□□□ -0.53
PNKP-217ENST00000625216 MST1P26927 711 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 GSTM5P46439 218 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 TRA2BP62995 288 aaKnown RBP11.73□□□□□ -0.53
PNKP-217ENST00000625216 NFYCQ13952 458 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 MPEG1Q2M385 716 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 DPY19L1Q2PZI1 675 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 PGS1Q32NB8 556 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 TRMT5Q32P41 509 aaKnown RBP11.73□□□□□ -0.53
PNKP-217ENST00000625216 C16orf89Q6UX73 402 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 MSANTD1Q6ZTZ1 278 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 GALNTL5Q7Z4T8 443 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 DEFB107AQ8IZN7 70 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 PGAM4Q8N0Y7 254 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 DPP10Q8N608 796 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 OR14A16Q8NHC5 309 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 UCN3Q969E3 161 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 MAPKAP1Q9BPZ7 522 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 SLC39A3Q9BRY0 314 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 WDR41Q9HAD4 459 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 IL1RL2Q9HB29 575 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 KLHL1Q9NR64 748 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 FBXW2Q9UKT8 454 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 YARS2Q9Y2Z4 477 aaKnown RBP11.73□□□□□ -0.53
PNKP-217ENST00000625216 ASB4Q9Y574 426 aa11.73□□□□□ -0.53
PNKP-217ENST00000625216 ICE1Q9Y2F5 2266 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 CFAP73A6NFT4 308 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 TGFBR3LH3BV60 316 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 NME2P1O60361 137 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 PRKRAO75569 313 aaKnown RBP11.72□□□□□ -0.53
PNKP-217ENST00000625216 AIFM1O95831 613 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 HOXB9P17482 250 aaPredicted RBP11.72□□□□□ -0.53
PNKP-217ENST00000625216 TNNI3P19429 210 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 DDCP20711 480 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 EFNA1P20827 205 aaPredicted RBP11.72□□□□□ -0.53
PNKP-217ENST00000625216 NME2P22392 152 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 CPN2P22792 545 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 PPP2R1BP30154 601 aa11.72□□□□□ -0.53
PNKP-217ENST00000625216 TLX1P31314 330 aaPredicted RBP11.72□□□□□ -0.53
PNKP-217ENST00000625216 KIR3DL1P43629 444 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms