RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ELK1P19419 428 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 ITGB8P26012 769 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 EPHB3P54753 998 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 PPP3R1P63098 170 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 TNK1Q13470 666 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 RAB33AQ14088 237 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 KLHL22Q53GT1 634 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 PLEKHS1Q5SXH7 462 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 FAM27D1Q5T7N8 215 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 ZNF767PQ75MW2 155 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 ANKRD33Q7Z3H0 272 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 C16orf62Q7Z3J2 963 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 CFAP206Q8IYR0 622 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 CBARPQ8N350 705 aaPredicted RBP17.32■□□□□ 0.36
UPF1-210ENST00000600689 TMEM43Q9BTV4 400 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 ABCG5Q9H222 651 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 NIPAL2Q9H841 368 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 DSPPQ9NZW4 1301 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 GLOD5A6NK44 160 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 CLDN20P56880 219 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 CDKL4Q5MAI5 379 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 CREB3L2Q70SY1 520 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 KLBQ86Z14 1044 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 C9orf62Q8N4C0 152 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 FAM181AQ8N9Y4 354 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 ZFPM2Q8WW38 1151 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 ATF6BQ99941 703 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 MCOLN1Q9GZU1 580 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 DIMT1Q9UNQ2 313 aaKnown RBP17.32■□□□□ 0.36
UPF1-210ENST00000600689 TEX46H3BTG2 121 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 CDK2AP1O14519 115 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 CCL5P13501 91 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 MNX1P50219 401 aaPredicted RBP17.32■□□□□ 0.36
UPF1-210ENST00000600689 SNRPD1P62314 119 aaKnown RBP17.32■□□□□ 0.36
UPF1-210ENST00000600689 GPR176Q14439 515 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 SLC30A6Q6NXT4 461 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 TMEM220Q6QAJ8 160 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 LRRC17Q8N6Y2 441 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 SORCS1Q8WY21 1168 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 CFAP97Q9P2B7 532 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 DYRK1BQ9Y463 629 aa17.32■□□□□ 0.36
UPF1-210ENST00000600689 FAM183AA6NL82 134 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 AGAP14A8MT82 685 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 PDGFAP04085 211 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 CCT3P49368 545 aaKnown RBP17.31■□□□□ 0.36
UPF1-210ENST00000600689 ZSWIM7Q19AV6 140 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 CDONQ4KMG0 1287 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 Q6ZNB5 142 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 OR11H4Q8NGC9 324 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 DMRT3Q9NQL9 472 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 PTGFRNQ9P2B2 879 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 XIRP2A4UGR9 3374 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 FAAHO00519 579 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 HCN1O60741 890 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 SOCS5O75159 536 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 OR7A10O76100 309 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 NR2F1P10589 423 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 CXCL3P19876 107 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 MTNR1AP48039 350 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 EVX1P49640 407 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 RPL6Q02878 288 aaKnown RBP17.31■□□□□ 0.36
UPF1-210ENST00000600689 TRMT11Q7Z4G4 463 aaKnown RBP17.31■□□□□ 0.36
UPF1-210ENST00000600689 C6orf120Q7Z4R8 191 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 RASGEF1AQ8N9B8 481 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 ZNF689Q96CS4 500 aaPredicted RBP17.31■□□□□ 0.36
UPF1-210ENST00000600689 BRF2Q9HAW0 419 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 KLHL1Q9NR64 748 aa17.31■□□□□ 0.36
UPF1-210ENST00000600689 HRGP04196 525 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 SLC6A11P48066 632 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 ZNF81P51508 661 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 DCDC1P59894 354 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 SP140Q13342 867 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 CNKSR3Q6P9H4 555 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 QSOX2Q6ZRP7 698 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 GTPBP2Q9BX10 602 aaKnown RBP17.3■□□□□ 0.36
UPF1-210ENST00000600689 TTTY10Q9BZA0 68 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 MRPL17Q9NRX2 175 aaKnown RBP17.3■□□□□ 0.36
UPF1-210ENST00000600689 A0A1W2PPK0 400 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 ZC3H12DA2A288 527 aaKnown RBP17.3■□□□□ 0.36
UPF1-210ENST00000600689 GABRPO00591 440 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 PRKRAO75569 313 aaKnown RBP17.3■□□□□ 0.36
UPF1-210ENST00000600689 SLC22A5O76082 557 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 FAM71E1Q6IPT2 247 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 TCEAL8Q8IYN2 117 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 BBS1Q8NFJ9 593 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 CEP76Q8TAP6 659 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 PMEPA1Q969W9 287 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 FOPNLQ96NB1 174 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 F2RL3Q96RI0 385 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.3■□□□□ 0.36
UPF1-210ENST00000600689 ITM2BQ9Y287 266 aa17.3■□□□□ 0.36
UPF1-210ENST00000600689 OBSL1O75147 1896 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 A0A1W2PRU2 124 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 NPIPB8E9PQR5 432 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 B4GALT2O60909 372 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 LIMS3P0CW19 117 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 LIMS4P0CW20 117 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 ACRP10323 421 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 NPPBP16860 134 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 PTGS2P35354 604 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms