RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CASRP41180 1078 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 PPICP45877 212 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 TNFSF10P50591 281 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 HLCSP50747 726 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 NR0B1P51843 470 aaKnown RBP17.89■□□□□ 0.45
UPF1-209ENST00000600310 DCAF7P61962 342 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 HBA1P69905 142 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 SF3A3Q12874 501 aaKnown RBP eCLIP17.89■□□□□ 0.455e-7■■■□□ 14.8
UPF1-209ENST00000600310 ZNF468Q5VIY5 522 aaPredicted RBP17.89■□□□□ 0.45
UPF1-209ENST00000600310 TMEM64Q6YI46 380 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 CLECL1Q8IZS7 167 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 TMEM156Q8N614 296 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 CATSPER1Q8NEC5 780 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 SLC22A8Q8TCC7 542 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 VSTM2LQ96N03 204 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 OR52E6Q96RD3 313 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 ITPAQ9BY32 194 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 TRIM4Q9C037 500 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 ZNF385DQ9H6B1 395 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 ANKRD10Q9NXR5 420 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 PCDHGB4Q9UN71 923 aa17.89■□□□□ 0.45
UPF1-209ENST00000600310 NME6O75414 186 aaPredicted RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 NCF2P19878 526 aaPredicted RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 CYB561P49447 251 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 ST13P50502 369 aaKnown RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 POLR2JP52435 117 aaKnown RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 PRR5P85299 388 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 OC90Q02509 493 aaPredicted RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 KLRB1Q12918 225 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 TLR1Q15399 786 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 NADK2Q4G0N4 442 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 OPN5Q6U736 354 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 LYPD8Q6UX82 237 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 ANKRD46Q86W74 232 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 FUNDC1Q8IVP5 155 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 GPALPP1Q8IXQ4 340 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 TAGAPQ8N103 731 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 TEX19Q8NA77 164 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 NUP43Q8NFH3 380 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 C10orf82Q8WW14 230 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 ASB15Q8WXK1 588 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 FAM120BQ96EK7 910 aaKnown RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 LCORQ96JN0 433 aaPredicted RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 BTBD9Q96Q07 612 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 NXF5Q9H1B4 397 aaKnown RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 RABEP2Q9H5N1 569 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 CXorf36Q9H7Y0 433 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 FOLH1BQ9HBA9 442 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 BTNL2Q9UIR0 455 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 ERVK-11Q9UQG0 969 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 B3GNT3Q9Y2A9 372 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 GPR55Q9Y2T6 319 aaPredicted RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 SNX8Q9Y5X2 465 aa17.88■□□□□ 0.45
UPF1-209ENST00000600310 TNRC6AQ8NDV7 1962 aaKnown RBP17.88■□□□□ 0.45
UPF1-209ENST00000600310 CPAMD8Q8IZJ3 1885 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 ERN1O75460 977 aaKnown RBP17.87■□□□□ 0.45
UPF1-209ENST00000600310 OR6B1O95007 311 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 ABCB1P08183 1280 aaPredicted RBP17.87■□□□□ 0.45
UPF1-209ENST00000600310 DRD4P21917 467 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 SOX3P41225 446 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 CCT3P49368 545 aaKnown RBP17.87■□□□□ 0.45
UPF1-209ENST00000600310 LRRC74AQ0VAA2 488 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 NFATC3Q12968 1075 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 OR1C1Q15619 314 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 SLC6A19Q695T7 634 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 MSANTD1Q6ZTZ1 278 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 PTRH1Q86Y79 214 aaKnown RBP17.87■□□□□ 0.45
UPF1-209ENST00000600310 CPSF7Q8N684 471 aaKnown RBP17.87■□□□□ 0.45
UPF1-209ENST00000600310 MDS2Q8NDY4 140 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 OR4A15Q8NGL6 344 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 PNPLA2Q96AD5 504 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 HSPBAP1Q96EW2 488 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 CCDC115Q96NT0 180 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 MS4A4EQ96PG1 132 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 MFRPQ9BY79 579 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 NSRP1Q9H0G5 558 aaKnown RBP17.87■□□□□ 0.45
UPF1-209ENST00000600310 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.87■□□□□ 0.45
UPF1-209ENST00000600310 ZCCHC3Q9NUD5 404 aaKnown RBP17.87■□□□□ 0.45
UPF1-209ENST00000600310 LRFN1Q9P244 771 aa17.87■□□□□ 0.45
UPF1-209ENST00000600310 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 TRAV17A0A0B4J275 112 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 FRG2CA6NGY1 282 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 A8MVJ9 347 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 TO15178 435 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 ACOX3O15254 700 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 NEURL1O76050 574 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 CPSF4O95639 269 aaKnown RBP17.86■□□□□ 0.45
UPF1-209ENST00000600310 CT45A8P0DMV1 189 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 CT45A9P0DMV2 189 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 PRKAG1P54619 331 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 PSG6Q00889 435 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 ZNF155Q12901 538 aaPredicted RBP17.86■□□□□ 0.45
UPF1-209ENST00000600310 RCAN2Q14206 197 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 CT45A2Q5DJT8 189 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 SPINK14Q6IE38 97 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 BLOC1S3Q6QNY0 202 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 ZNF227Q86WZ6 799 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 HORMAD2Q8N7B1 307 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 OR56A1Q8NGH5 318 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 GOT1L1Q8NHS2 421 aaPredicted RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms