RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 RAB21Q9UL25 225 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 MYO9AB2RTY4 2548 aa13.02□□□□□ -0.33
LIG1-218ENST00000599322 OR14I1A6ND48 311 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 FIGNL2A6NMB9 653 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 PRSS44E7EML9 344 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 ZNF354AO60765 605 aaPredicted RBP13.01□□□□□ -0.33
LIG1-218ENST00000599322 ABCB7O75027 752 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 PPM1BO75688 479 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 LINC00032P0C843 101 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 PCSK2P16519 638 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 GPX3P22352 226 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 PRPH2P23942 346 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 ABCD3P28288 659 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 GPC1P35052 558 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 RPL3P39023 403 aaKnown RBP13.01□□□□□ -0.33
LIG1-218ENST00000599322 MAGEA5P43359 124 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 TOMM20Q15388 145 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 HYAL4Q2M3T9 481 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 GALNTL6Q49A17 601 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 TRMT12Q53H54 448 aaKnown RBP13.01□□□□□ -0.33
LIG1-218ENST00000599322 SH2D4BQ5SQS7 431 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 WLSQ5T9L3 541 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 FAM180BQ6P0A1 224 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 RNF165Q6ZSG1 346 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 R3HCC1LQ7Z5L2 792 aaKnown RBP13.01□□□□□ -0.33
LIG1-218ENST00000599322 DOLPP1Q86YN1 238 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 ZNF441Q8N8Z8 693 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 OR9A2Q8NGT5 310 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 ZFP28Q8NHY6 868 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 PHF10Q8WUB8 498 aaKnown RBP13.01□□□□□ -0.33
LIG1-218ENST00000599322 KAT2AQ92830 837 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 ADIPOR1Q96A54 375 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 ITPAQ9BY32 194 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 NXF5Q9H1B4 397 aaKnown RBP13.01□□□□□ -0.33
LIG1-218ENST00000599322 ZDHHC11Q9H8X9 412 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 CHST11Q9NPF2 352 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 TAS2R7Q9NYW3 318 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 ZNF639Q9UID6 485 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 MRTO4Q9UKD2 239 aaKnown RBP13.01□□□□□ -0.33
LIG1-218ENST00000599322 ACAD8Q9UKU7 415 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 MEMO1Q9Y316 297 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 OR10H1Q9Y4A9 318 aa13.01□□□□□ -0.33
LIG1-218ENST00000599322 TRGV5A0A0B4J1U4 118 aa13□□□□□ -0.33
LIG1-218ENST00000599322 PINLYPA6NC86 204 aa13□□□□□ -0.33
LIG1-218ENST00000599322 NPIPA2E9PIF3 369 aa13□□□□□ -0.33
LIG1-218ENST00000599322 NPIPA3F8WFD2 350 aa13□□□□□ -0.33
LIG1-218ENST00000599322 TM9SF1O15321 606 aa13□□□□□ -0.33
LIG1-218ENST00000599322 SUSD5O60279 629 aa13□□□□□ -0.33
LIG1-218ENST00000599322 HCN1O60741 890 aa13□□□□□ -0.33
LIG1-218ENST00000599322 REM1O75628 298 aa13□□□□□ -0.33
LIG1-218ENST00000599322 TRAPPC6AO75865 159 aa13□□□□□ -0.33
LIG1-218ENST00000599322 GLSO94925 669 aaPredicted RBP13□□□□□ -0.33
LIG1-218ENST00000599322 SNUPNO95149 360 aaKnown RBP13□□□□□ -0.33
LIG1-218ENST00000599322 HSPA4LO95757 839 aa13□□□□□ -0.33
LIG1-218ENST00000599322 CLPSP04118 112 aa13□□□□□ -0.33
LIG1-218ENST00000599322 JUNP05412 331 aaKnown RBP13□□□□□ -0.33
LIG1-218ENST00000599322 BPGMP07738 259 aa13□□□□□ -0.33
LIG1-218ENST00000599322 AGAP20933 346 aa13□□□□□ -0.33
LIG1-218ENST00000599322 S1PR1P21453 382 aa13□□□□□ -0.33
LIG1-218ENST00000599322 GDF1P27539 372 aa13□□□□□ -0.33
LIG1-218ENST00000599322 IL12BP29460 328 aa13□□□□□ -0.33
LIG1-218ENST00000599322 FBXW4P57775 412 aa13□□□□□ -0.33
LIG1-218ENST00000599322 RPL38P63173 70 aaKnown RBP13□□□□□ -0.33
LIG1-218ENST00000599322 MRPS35P82673 323 aaKnown RBP13□□□□□ -0.33
LIG1-218ENST00000599322 ZNF844Q08AG5 666 aa13□□□□□ -0.33
LIG1-218ENST00000599322 MGAT2Q10469 447 aa13□□□□□ -0.33
LIG1-218ENST00000599322 EFR3AQ14156 821 aa13□□□□□ -0.33
LIG1-218ENST00000599322 SF3B4Q15427 424 aaKnown RBP eCLIP13□□□□□ -0.33
LIG1-218ENST00000599322 LTB4RQ15722 352 aa13□□□□□ -0.33
LIG1-218ENST00000599322 ATP6AP1LQ52LC2 224 aa13□□□□□ -0.33
LIG1-218ENST00000599322 ZNF628Q5EBL2 1059 aa13□□□□□ -0.33
LIG1-218ENST00000599322 KANK2Q63ZY3 851 aa13□□□□□ -0.33
LIG1-218ENST00000599322 FAM71E1Q6IPT2 247 aa13□□□□□ -0.33
LIG1-218ENST00000599322 LYPD8Q6UX82 237 aa13□□□□□ -0.33
LIG1-218ENST00000599322 TMEM64Q6YI46 380 aa13□□□□□ -0.33
LIG1-218ENST00000599322 CD163Q86VB7 1156 aa13□□□□□ -0.33
LIG1-218ENST00000599322 PRR22Q8IZ63 422 aa13□□□□□ -0.33
LIG1-218ENST00000599322 SPPL2AQ8TCT8 520 aa13□□□□□ -0.33
LIG1-218ENST00000599322 AGR3Q8TD06 166 aa13□□□□□ -0.33
LIG1-218ENST00000599322 TWIST2Q8WVJ9 160 aa13□□□□□ -0.33
LIG1-218ENST00000599322 PPCDCQ96CD2 204 aa13□□□□□ -0.33
LIG1-218ENST00000599322 CTHRC1Q96CG8 243 aa13□□□□□ -0.33
LIG1-218ENST00000599322 OMA1Q96E52 524 aa13□□□□□ -0.33
LIG1-218ENST00000599322 C11orf24Q96F05 449 aaPredicted RBP13□□□□□ -0.33
LIG1-218ENST00000599322 MECRQ9BV79 373 aa13□□□□□ -0.33
LIG1-218ENST00000599322 C3orf14Q9HBI5 128 aa13□□□□□ -0.33
LIG1-218ENST00000599322 SSU72Q9NP77 194 aaKnown RBP13□□□□□ -0.33
LIG1-218ENST00000599322 DDX18Q9NVP1 670 aaKnown RBP13□□□□□ -0.33
LIG1-218ENST00000599322 KLRF1Q9NZS2 232 aa13□□□□□ -0.33
LIG1-218ENST00000599322 SH3BP4Q9P0V3 963 aa13□□□□□ -0.33
LIG1-218ENST00000599322 KLF2Q9Y5W3 355 aaPredicted RBP13□□□□□ -0.33
LIG1-218ENST00000599322 CHCHD2Q9Y6H1 151 aaPredicted RBP13□□□□□ -0.33
LIG1-218ENST00000599322 CREBBPQ92793 2442 aa13□□□□□ -0.33
LIG1-218ENST00000599322 A0A087WV62 115 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 A0A0G2JMM0 328 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 A0A1W2PPB8 328 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 A0A1W2PRS3 328 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 WDR91A4D1P6 747 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 FRG2CA6NGY1 282 aa12.99□□□□□ -0.33
LIG1-218ENST00000599322 KIR3DP1A8MWS1 328 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms