RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PCSK2	P16519	638 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	DNASE1	P24855	282 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	PHB	P35232	272 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	DEK	P35659	375 aa	Known RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	PEX19	P40855	299 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	PTGDS	P41222	190 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	MAGEA12	P43365	314 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	ALDH9A1	P49189	494 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	CDH13	P55290	713 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	PLCXD2	Q0VAA5	305 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	FOXD4	Q12950	439 aa	Predicted RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	NHSL2	Q5HYW2	709 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	C8orf74	Q6P047	294 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	PLXDC2	Q6UX71	529 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	MILR1	Q7Z6M3	343 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	C9orf106	Q8NAJ2	232 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	CHDH	Q8NE62	594 aa	Predicted RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	OR1J4	Q8NGS1	313 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	LINC01560	Q8TB33	94 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	RDH11	Q8TC12	318 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	SLC44A1	Q8WWI5	657 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	ANP32B	Q92688	251 aa	Known RBP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	HGD	Q93099	445 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	ISL2	Q96A47	359 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	KLHL29	Q96CT2	875 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	OMA1	Q96E52	524 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	LRRC46	Q96FV0	321 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	POM121	Q96HA1	1249 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	OSBPL11	Q9BXB4	747 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	AHSP	Q9NZD4	102 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	PLLP	Q9Y342	182 aa		9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	NIPBL	Q6KC79	2804 aa	eCLIP	9.6	□□□□□ -0.87
LSM4-205	ENST00000597776	MED12	Q93074	2177 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	C1orf226	A1L170	272 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	PRAMEF25	A6NGN4	478 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	TUBAL3	A6NHL2	446 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	GOLGA6L10	A6NI86	522 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	SNPH	O15079	494 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	UGT2B11	O75310	529 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	OTC	P00480	354 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	ATP1B1	P05026	303 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	TMIGD3	P0DMS9	266 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	CSNK2A2	P19784	350 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	CTSS	P25774	331 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	SLCO1A2	P46721	670 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	DGKQ	P52824	942 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	PPP2R2A	P63151	447 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	MRPS35	P82673	323 aa	Known RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	SRY	Q05066	204 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	MAP4K2	Q12851	820 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	FOXF2	Q12947	444 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	DAZAP2	Q15038	168 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	GGTA1P	Q4G0N0	100 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	TRMT12	Q53H54	448 aa	Known RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	TCHHL1	Q5QJ38	904 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	C10orf62	Q5T681	223 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	FBXW10	Q5XX13	1052 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	PAMR1	Q6UXH9	720 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	C1orf52	Q8N6N3	182 aa	Known RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	OR52R1	Q8NGF1	315 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	UHMK1	Q8TAS1	419 aa	Known RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	ZNF483	Q8TF39	744 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	SELENOM	Q8WWX9	145 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	TM4SF18	Q96CE8	201 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	CNRIP1	Q96F85	164 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	LCOR	Q96JN0	433 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	PAFAH2	Q99487	392 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	TUBA1C	Q9BQE3	449 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	CDC42EP4	Q9H3Q1	356 aa	Known RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	ANKRA2	Q9H9E1	313 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	KLRF1	Q9NZS2	232 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	ZNF639	Q9UID6	485 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	FOXD3	Q9UJU5	478 aa	Predicted RBP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	TMCO1	Q9UM00	188 aa		9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	9.59	□□□□□ -0.87
LSM4-205	ENST00000597776	ACAN	P16112	2415 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776		A8MT66	165 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	TRIM49D1	C9J1S8	452 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	POC1B-GALNT4	F8VUJ3	575 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	ACOX3	O15254	700 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	CDH16	O75309	829 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	GUCY1B2	O75343	617 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	OR4F21	O95013	312 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	ACTL6A	O96019	429 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	SBK3	P0C264	359 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	EPX	P11678	715 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	CYP4B1	P13584	511 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	CHN1	P15882	459 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	NAGA	P17050	411 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	TCEA1	P23193	301 aa	Known RBP	9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	OPRM1	P35372	400 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	EMD	P50402	254 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	RCAN2	Q14206	197 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	POU4F3	Q15319	338 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	SF3B4	Q15427	424 aa	Known RBP eCLIP	9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	TSNAXIP1	Q2TAA8	658 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	SLC30A6	Q6NXT4	461 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	NUP54	Q7Z3B4	507 aa		9.58	□□□□□ -0.88
LSM4-205	ENST00000597776	LUZP2	Q86TE4	346 aa		9.58	□□□□□ -0.88

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