RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DOK4Q8TEW6 326 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 LRRC58Q96CX6 371 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 ZBED6CLQ96FA7 236 aaPredicted RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 PANX1Q96RD7 426 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 MESP1Q9BRJ9 268 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 GPATCH1Q9BRR8 931 aaKnown RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 SLC39A3Q9BRY0 314 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 SOX17Q9H6I2 414 aaPredicted RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 CXorf36Q9H7Y0 433 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 RMND5AQ9H871 391 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 WDR54Q9H977 334 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 IL1RL2Q9HB29 575 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 TAS2R9Q9NYW1 312 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 VAPAQ9P0L0 249 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 MKL2Q9ULH7 1088 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 MMACHCQ9Y4U1 282 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 FER1L5A0AVI2 2057 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 FLNAP21333 2647 aaKnown RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 LOC101059948A0A1B0GTJ6 334 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 TCRBV16S1A1N1A0A5B0 115 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 IDSB3KWA1 339 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 RFXANKO14593 260 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ERN1O75460 977 aaKnown RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 KCNH1O95259 989 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 NPPAP01160 153 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ATP1B1P05026 303 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 HEXBP07686 556 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 UMODP07911 640 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ABCB1P08183 1280 aaPredicted RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 RAB40ALP0C0E4 278 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 CT62P0C5K7 136 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ZCCHC18P0CG32 403 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 S1PR1P21453 382 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 F8A1P23610 371 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 PTPN4P29074 926 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 NTSP30990 170 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 STT3AP46977 705 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 NUDT2P50583 147 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 MNAT1P51948 309 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 EMP2P54851 167 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 LRRC74AQ0VAA2 488 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 STX4Q12846 297 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 HSPB3Q12988 150 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 BIKQ13323 160 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ART3Q13508 389 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 NFYCQ13952 458 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 CAPRIN1Q14444 709 aaKnown RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 NCF4Q15080 339 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 LTB4RQ15722 352 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 PRICKLE4Q2TBC4 344 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 TRMT5Q32P41 509 aaKnown RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 MINDY4Q4G0A6 757 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 RUNDC3AQ59EK9 446 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ZNF628Q5EBL2 1059 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 C6orf10Q5SRN2 563 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 MFSD4BQ5TF39 518 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 FAM111BQ6SJ93 734 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 TMEM205Q6UW68 189 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ZNF621Q6ZSS3 439 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 DHDDSQ86SQ9 333 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 SAMD14Q8IZD0 417 aaPredicted RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 ST13P4Q8IZP2 240 aaPredicted RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 NLGN4XQ8N0W4 816 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 LRRC25Q8N386 305 aaPredicted RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 AMER2Q8N7J2 671 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ENDOVQ8N8Q3 282 aaKnown RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 SIMC1Q8NDZ2 872 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 NLGN4YQ8NFZ3 816 aaPredicted RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 OR9A2Q8NGT5 310 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 CT55Q8WUE5 264 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 KAT2AQ92830 837 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ROPN1LQ96C74 230 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ELP4Q96EB1 424 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 CGREF1Q99674 301 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 BTBD10Q9BSF8 475 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 TMUB1Q9BVT8 246 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 TRIM8Q9BZR9 551 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 C1orf21Q9H246 121 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 EPS8L2Q9H6S3 715 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 ANKRA2Q9H9E1 313 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 GIMAP4Q9NUV9 329 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 C14orf105Q9NVL8 296 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 GID8Q9NWU2 228 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 GPN3Q9UHW5 284 aaPredicted RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 ZNF639Q9UID6 485 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 C3orf18Q9UK00 162 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 CROTQ9UKG9 612 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 FBN1P35555 2871 aaKnown RBP8.79□□□□□ -1
TRIM28-208ENST00000597172 AKAP6Q13023 2319 aa8.79□□□□□ -1
TRIM28-208ENST00000597172 SEC16AO15027 2179 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 ANKUB1A6NFN9 424 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 ERICH4A6NGS2 130 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 A8MUA0 341 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 C9J4A7 227 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 HRKO00198 91 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 PLOD2O00469 737 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 GSC2O15499 205 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 ALOX12BO75342 701 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 KRT16P08779 473 aa8.78□□□□□ -1
TRIM28-208ENST00000597172 UQCRC2P22695 453 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms