RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 LAMP1P11279 417 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 GP1BBP13224 206 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 DDX5P17844 614 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 NME2P22392 152 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 GNLYP22749 145 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 RPL3P39023 403 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 EMDP50402 254 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 RIPPLY3P57055 190 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 ALDH6A1Q02252 535 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 PLGLB1Q02325 96 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 ZNF155Q12901 538 aaPredicted RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 MRPL49Q13405 166 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 ELOAQ14241 798 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 CEBPEQ15744 281 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 SMU1Q2TAY7 513 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 SLC9B1Q4ZJI4 515 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 RTL4Q6ZR62 310 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 FAM47EQ6ZV65 393 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 LARP4Q71RC2 724 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIG1-211ENST00000596457 GPALPP1Q8IXQ4 340 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 SLC15A4Q8N697 577 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 PSD4Q8NDX1 1056 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 PIWIL2Q8TC59 973 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 FAR1Q8WVX9 515 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 TP53INP1Q96A56 240 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 CTHRC1Q96CG8 243 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 MTERF3Q96E29 417 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 ZBED6CLQ96FA7 236 aaPredicted RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 THOC1Q96FV9 657 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 LCORQ96JN0 433 aaPredicted RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 MARK4Q96L34 752 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 PRPF18Q99633 342 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 NXF5Q9H1B4 397 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 TSPAN10Q9H1Z9 355 aaPredicted RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 TRIM45Q9H8W5 580 aaPredicted RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 FOLH1BQ9HBA9 442 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 SLCO1B3Q9NPD5 702 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 EQTNQ9NQ60 294 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 SACM1LQ9NTJ5 587 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 DDX18Q9NVP1 670 aaKnown RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 ATP6V1HQ9UI12 483 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 KLF13Q9Y2Y9 288 aaPredicted RBP10.23□□□□□ -0.77
LIG1-211ENST00000596457 NPFFR2Q9Y5X5 522 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 FLNCQ14315 2725 aa10.23□□□□□ -0.77
LIG1-211ENST00000596457 A0A1W2PRB8 838 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 CLEC18AA5D8T8 446 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 CAPN14A8MX76 684 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 CDK2AP1O14519 115 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 TBX19O60806 448 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 COQ9O75208 318 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 ERN1O75460 977 aaKnown RBP10.22□□□□□ -0.77
LIG1-211ENST00000596457 REM1O75628 298 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 ABCB1P08183 1280 aaPredicted RBP10.22□□□□□ -0.77
LIG1-211ENST00000596457 CCL3P10147 92 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 PRPS1L1P21108 318 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 CNR1P21554 472 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 PIGAP37287 484 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 UQCRFS1P47985 274 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 DNASE1L1P49184 302 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 CDK9P50750 372 aaKnown RBP10.22□□□□□ -0.77
LIG1-211ENST00000596457 CLDN8P56748 225 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 FBXW4P57775 412 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 PLCXD2Q0VAA5 305 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 PDE7AQ13946 482 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 RPS6KA2Q15349 733 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 INAQ16352 499 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 FHL5Q5TD97 284 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 PRAMEF20Q5VT98 475 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 SLC22A10Q63ZE4 541 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 LYPD8Q6UX82 237 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 CLEC18BQ6UXF7 455 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 WDR53Q7Z5U6 358 aaPredicted RBP10.22□□□□□ -0.77
LIG1-211ENST00000596457 SLC44A2Q8IWA5 706 aaPredicted RBP10.22□□□□□ -0.77
LIG1-211ENST00000596457 FAM26EQ8N5C1 309 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 ZNF441Q8N8Z8 693 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 CLEC18CQ8NCF0 446 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 NUP43Q8NFH3 380 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 DNAJB8Q8NHS0 232 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 PRR7Q8TB68 274 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 CKAP2Q8WWK9 683 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 SPACA9Q96E40 222 aaPredicted RBP10.22□□□□□ -0.77
LIG1-211ENST00000596457 ELP4Q96EB1 424 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 MAGEB18Q96M61 343 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 JSRP1Q96MG2 331 aaPredicted RBP10.22□□□□□ -0.77
LIG1-211ENST00000596457 DUSP26Q9BV47 211 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 DEPPQ9NTK1 212 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 ATAD3AQ9NVI7 634 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 TAS2R9Q9NYW1 312 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 C19orf53Q9UNZ5 99 aaPredicted RBP10.22□□□□□ -0.77
LIG1-211ENST00000596457 PCDHGB6Q9Y5F9 930 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 SNX8Q9Y5X2 465 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 USH1CQ9Y6N9 552 aa10.22□□□□□ -0.77
LIG1-211ENST00000596457 UTP20O75691 2785 aaKnown RBP10.21□□□□□ -0.77
LIG1-211ENST00000596457 EXPH5Q8NEV8 1989 aa10.21□□□□□ -0.77
LIG1-211ENST00000596457 PINLYPA6NC86 204 aa10.21□□□□□ -0.77
LIG1-211ENST00000596457 NPIPA5E9PKD4 350 aa10.21□□□□□ -0.77
LIG1-211ENST00000596457 UPK1AO00322 258 aa10.21□□□□□ -0.77
LIG1-211ENST00000596457 TP53I11O14683 189 aa10.21□□□□□ -0.77
LIG1-211ENST00000596457 PLOD3O60568 738 aa10.21□□□□□ -0.77
LIG1-211ENST00000596457 WISP2O76076 250 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms