RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 C1QBP02746 253 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SEMG1P04279 462 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ALPPP05187 535 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 HLA-DQB2P05538 268 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 LCKP06239 509 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CDK1P06493 297 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 LINC00032P0C843 101 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ADORA3P0DMS8 318 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SLC2A3P11169 496 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 GLB1P16278 677 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ZNF28P17035 718 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CTRB1P17538 263 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TPH1P17752 444 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TSPAN8P19075 237 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 POLR2CP19387 275 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 CD9P21926 228 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PRKACBP22694 351 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 GADD45AP24522 165 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PTX3P26022 381 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 HLA-DMAP28067 261 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 HOXD9P28356 352 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 GTF2E2P29084 291 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 FMO3P31513 532 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 AKT1P31749 480 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CA5AP35218 305 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 HTR2BP41595 481 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TSPAN7P41732 249 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CASP2P42575 452 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 LHX1P48742 406 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CXCR3P49682 368 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SERPINH1P50454 418 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 ARHGDIAP52565 204 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PGGT1BP53609 377 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 DIO3P55073 304 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CDKN2DP55273 166 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 MTPNP58546 118 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SRP54P61011 504 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 UFM1P61960 85 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 LSM3P62310 102 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 PITX1P78337 314 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 SRSF2Q01130 221 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 CSTF3Q12996 717 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 TNK1Q13470 666 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PCOLCEQ15113 449 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ELOCQ15369 112 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 OR4D1Q15615 310 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 NKG7Q16617 165 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TBRG1Q3YBR2 411 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PARP15Q460N3 678 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 GPAT3Q53EU6 434 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 RAB41Q5JT25 222 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CEP78Q5JTW2 689 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 LRIF1Q5T3J3 769 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 FAM72AQ5TYM5 149 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 MANEALQ5VSG8 457 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 AFMIDQ63HM1 303 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CTRB2Q6GPI1 263 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 FAM72DQ6L9T8 149 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 MRNIPQ6NTE8 343 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 LETMD1Q6P1Q0 360 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 FAHD1Q6P587 224 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ERICH5Q6P6B1 374 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CYP20A1Q6UW02 462 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 C6orf15Q6UXA7 325 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 RANBP10Q6VN20 620 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ZNF782Q6ZMW2 699 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 ARHGAP36Q6ZRI8 547 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CLEC20AQ6ZU45 233 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 GPRIN3Q6ZVF9 776 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 RFPL4BQ6ZWI9 263 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CREB3L2Q70SY1 520 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 AHSA2Q719I0 299 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 RPS27LQ71UM5 84 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 GDPD3Q7L5L3 318 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TSPYL5Q86VY4 417 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 FAM72BQ86X60 149 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CALHM3Q86XJ0 350 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 GKN2Q86XP6 184 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 RNF130Q86XS8 419 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ARHGAP12Q8IWW6 846 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SYTL1Q8IYJ3 562 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ELMOD2Q8IZ81 293 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 FAM9CQ8IZT9 166 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 DEPDC4Q8N2C3 294 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TMEM86AQ8N2M4 240 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SPATA6LQ8N4H0 392 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 DNAJC22Q8N4W6 341 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.92□□□□□ -1.78
LIG3-211ENST00000588713 TOP6BLQ8N6T0 577 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 FAM86B1Q8N7N1 296 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CDYL2Q8N8U2 506 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 BMPERQ8N8U9 685 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 FNDC5Q8NAU1 212 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 B3GALNT2Q8NCR0 500 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PSD4Q8NDX1 1056 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 STAG3L4Q8TBR4 150 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 WFDC5Q8TCV5 224 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PROKR1Q8TCW9 393 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 THAP4Q8WY91 577 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 NCLNQ969V3 563 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms