RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PTGER1P34995 402 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 POLR2IP36954 125 aaKnown RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 ARRB1P49407 418 aaPredicted RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 CSNK2BP67870 215 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 MEP1AQ16819 746 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 DEFB110Q30KQ9 67 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 INAVAQ3KP66 663 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 FHL5Q5TD97 284 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 FAM111BQ6SJ93 734 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 RBM44Q6ZP01 1051 aaKnown RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 GPR141Q7Z602 305 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 OR4N5Q8IXE1 308 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 ALDH16A1Q8IZ83 802 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 OR5T3Q8NGG3 340 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 OR9A4Q8NGU2 314 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 OR52J3Q8NH60 311 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 PMM1Q92871 262 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 AHCYL2Q96HN2 611 aaKnown RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 TGM7Q96PF1 710 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 TUBA1CQ9BQE3 449 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 RBM38Q9H0Z9 239 aaKnown RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 SLC38A1Q9H2H9 487 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 PIGUQ9H490 435 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 MTHFD2LQ9H903 347 aaPredicted RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 NMNAT1Q9HAN9 279 aaPredicted RBP13.29□□□□□ -0.28
LIG3-205ENST00000585941 STARD5Q9NSY2 213 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 SOHLH2Q9NX45 425 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 LRIT1Q9P2V4 623 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 SLC13A4Q9UKG4 626 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 IFT52Q9Y366 437 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 CACNA1IQ9P0X4 2223 aa13.29□□□□□ -0.28
LIG3-205ENST00000585941 FAAHO00519 579 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 HCRTR1O43613 425 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ABCB7O75027 752 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 SDC3O75056 442 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 LDB3O75112 727 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ADAP00813 363 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 NT5EP21589 574 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 CBLP22681 906 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 PRKAR1BP31321 381 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 CTSKP43235 329 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 AVPR1BP47901 424 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 GABRA4P48169 554 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 RPP38P78345 283 aaKnown RBP13.28□□□□□ -0.28
LIG3-205ENST00000585941 CDK5R2Q13319 367 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 GANABQ14697 944 aaKnown RBP13.28□□□□□ -0.28
LIG3-205ENST00000585941 CTU2Q2VPK5 515 aaKnown RBP13.28□□□□□ -0.28
LIG3-205ENST00000585941 CNPY1Q3B7I2 92 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ARHGAP11BQ3KRB8 267 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ZBED5Q49AG3 693 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 DCST1Q5T197 706 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 DHRS4L2Q6PKH6 230 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 PLXDC1Q8IUK5 500 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ZNF595Q8IYB9 648 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 CDRT4Q8N9R6 151 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 SLC35A4Q96G79 324 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 STACQ99469 402 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ENAMQ9NRM1 1142 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 DUSP22Q9NRW4 184 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 UCKL1Q9NWZ5 548 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 KLHL28Q9NXS3 571 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 SCN3BQ9NY72 215 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 SATB2Q9UPW6 733 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 MGAT4BQ9UQ53 548 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 TPRKBQ9Y3C4 175 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 COMMD3-BMI1R4GMX3 469 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 SCN2AQ99250 2005 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 A0A1B0GVT2 93 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 A0A1W2PRQ8 180 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 HYKKA2RU49 373 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 FITM1A5D6W6 292 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 SLC1A7O00341 560 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 CLDN4O14493 209 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 FFAR1O14842 300 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 PCDH17O14917 1159 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 DUX1O43812 170 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 MRPS14O60783 128 aaKnown RBP13.28□□□□□ -0.28
LIG3-205ENST00000585941 COQ9O75208 318 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 UGT2B17O75795 530 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ANGPTL1O95841 491 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ALOX5P09917 674 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 CYP4B1P13584 511 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 GLB1P16278 677 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 IL7RP16871 459 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 IFNA8P32881 189 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 GPLD1P80108 840 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 BIKQ13323 160 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 DGCR6Q14129 220 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 GRM7Q14831 915 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 PRICKLE4Q2TBC4 344 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 PROX2Q3B8N5 592 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ZNF311Q5JNZ3 666 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 EXOSC6Q5RKV6 272 aaKnown RBP13.28□□□□□ -0.28
LIG3-205ENST00000585941 LYSMD4Q5XG99 296 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 DEF8Q6ZN54 512 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 WDR5BQ86VZ2 330 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 DEPDC4Q8N2C3 294 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 SLC16A11Q8NCK7 471 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 VANGL1Q8TAA9 524 aaPredicted RBP13.28□□□□□ -0.28
LIG3-205ENST00000585941 NCSTNQ92542 709 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms