RNA–Protein interactions for RNA: ENST00000572365.1

SF3B3-214, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-214ENST00000572365 POPDC2Q9HBU9 364 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 PIGVQ9NUD9 493 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 GIMAP4Q9NUV9 329 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 TRMT1Q9NXH9 659 aaKnown RBP5□□□□□ -1.61
SF3B3-214ENST00000572365 UBA2Q9UBT2 640 aaPredicted RBP5□□□□□ -1.61
SF3B3-214ENST00000572365 TRIM10Q9UDY6 481 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 CD84Q9UIB8 345 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 BLOC1S6Q9UL45 172 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 SNX7Q9UNH6 387 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 EXO1Q9UQ84 846 aaKnown RBP5□□□□□ -1.61
SF3B3-214ENST00000572365 ZNF148Q9UQR1 794 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 KCNK6Q9Y257 313 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 R3HDM2Q9Y2K5 976 aaKnown RBP5□□□□□ -1.61
SF3B3-214ENST00000572365 NUP210LQ5VU65 1888 aa5□□□□□ -1.61
SF3B3-214ENST00000572365 ARID1AO14497 2285 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 IGHV4-28A0A0C4DH34 117 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 IGHV5-51A0A0C4DH38 117 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 CTAGE9A4FU28 777 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 HIST1H2ABP04908 130 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 ATP1A1P05023 1023 aaKnown RBP4.99□□□□□ -1.61
SF3B3-214ENST00000572365 CCDC175P0C221 793 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 KRT13P13646 458 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 HIST1H2ADP20671 130 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 SYT1P21579 422 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 SAT1P21673 171 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 PRCPP42785 496 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 FNTAP49354 379 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 NDST2P52849 883 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 KIAA1024LP59773 190 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 GNG11P61952 73 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 RALGDSQ12967 914 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 EFNB3Q15768 340 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 CLPPQ16740 277 aaPredicted RBP4.99□□□□□ -1.61
SF3B3-214ENST00000572365 KBTBD12Q3ZCT8 623 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 FNBP1LQ5T0N5 605 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.99□□□□□ -1.61
SF3B3-214ENST00000572365 RWDD4Q6NW29 188 aaKnown RBP4.99□□□□□ -1.61
SF3B3-214ENST00000572365 IRGCQ6NXR0 463 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 TMEM207Q6UWW9 146 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 B3GNT6Q6ZMB0 384 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 LINC00696Q6ZRV3 163 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 Q6ZS92 163 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 HIST3H2AQ7L7L0 130 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 FBXL13Q8NEE6 735 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 WFDC11Q8NEX6 87 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 HDAC11Q96DB2 347 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 HSFY1Q96LI6 401 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 NSMCE3Q96MG7 304 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 TXLNGYQ9BZA5 131 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 MMP25Q9NPA2 562 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 ZNHIT6Q9NWK9 470 aaKnown RBP4.99□□□□□ -1.61
SF3B3-214ENST00000572365 MRPL15Q9P015 296 aaKnown RBP4.99□□□□□ -1.61
SF3B3-214ENST00000572365 TINAGQ9UJW2 476 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 PAIP2BQ9ULR5 123 aaKnown RBP4.99□□□□□ -1.61
SF3B3-214ENST00000572365 TMCO1Q9UM00 188 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 PLEKHA6Q9Y2H5 1048 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 PAM16Q9Y3D7 125 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 CHD3Q12873 2000 aaKnown RBP4.99□□□□□ -1.61
SF3B3-214ENST00000572365 HEATR5AQ86XA9 2040 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 SCN2AQ99250 2005 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 DNAJC13O75165 2243 aa4.99□□□□□ -1.61
SF3B3-214ENST00000572365 ILVBLA1L0T0 632 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 SYNDIG1LA6NDD5 238 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 TRIM49BA6NDI0 452 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 RNF212BA8MTL3 300 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 C21orf140B9A014 251 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 FAM72CH0Y354 149 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 H3BQF6 201 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 TNFRSF13BO14836 293 aaPredicted RBP4.98□□□□□ -1.61
SF3B3-214ENST00000572365 MAPK13O15264 365 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 POLR2DO15514 142 aaKnown RBP4.98□□□□□ -1.61
SF3B3-214ENST00000572365 OGG1O15527 345 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 MGRN1O60291 552 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 SMIM24O75264 130 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 CCDC166P0CW27 439 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 TROVE2P10155 538 aaKnown RBP eCLIP4.98□□□□□ -1.61
SF3B3-214ENST00000572365 SLC2A3P11169 496 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 G6PDP11413 515 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 FGF5P12034 268 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 ANXA7P20073 488 aaKnown RBP4.98□□□□□ -1.61
SF3B3-214ENST00000572365 NR2F2P24468 414 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 TRIM23P36406 574 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 MMP12P39900 470 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 RGRP47804 291 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 ARCN1P48444 511 aaKnown RBP4.98□□□□□ -1.61
SF3B3-214ENST00000572365 MXI1P50539 228 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 NUDT6P53370 316 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 PNLIPRP2P54317 469 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 RHOAP61586 193 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 SNRPFP62306 86 aaKnown RBP4.98□□□□□ -1.61
SF3B3-214ENST00000572365 PDE1BQ01064 536 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 ZNF235Q14590 738 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 IL11RAQ14626 422 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 CYTH1Q15438 398 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 ASIC2Q16515 512 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 C3AR1Q16581 482 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 PNLIPRP3Q17RR3 467 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 FAM72AQ5TYM5 149 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 GARNL3Q5VVW2 1013 aa4.98□□□□□ -1.61
SF3B3-214ENST00000572365 MLIPQ5VWP3 458 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms