RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 BLVRAP53004 296 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SMIM11AP58511 58 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 MRPS15P82914 257 aaKnown RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 TAP2Q03519 686 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 CNTN1Q12860 1018 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 HEPACAMQ14CZ8 416 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SEC23BQ15437 767 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 ZMAT1Q5H9K5 638 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 ERN2Q76MJ5 926 aaKnown RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 PHC2Q8IXK0 858 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 ASCC1Q8N9N2 400 aaKnown RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 OR9A1PQ8NGU1 263 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 FAM3CQ92520 227 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 PMM1Q92871 262 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SLC25A46Q96AG3 418 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 AP2M1Q96CW1 435 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 PPP1R16AQ96I34 528 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 GABRG3Q99928 467 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SLC2A4RGQ9NR83 387 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 CCDC88CQ9P219 2028 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 A0A1W2PQF6 199 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 MEIOCA2RUB1 952 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SNTNA6NMZ2 147 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 AP3D1O14617 1153 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 MYL12BO14950 172 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SOX14O95416 240 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 IL1AP01583 271 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 BCHEP06276 602 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 ELFN1P0C7U0 828 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 HOXB2P14652 356 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 DDX5P17844 614 aaKnown RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 GSTM5P46439 218 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 C19orf57Q0VDD7 668 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 ASAH1Q13510 395 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 CST6Q15828 149 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 ZNF658BQ4V348 819 aaPredicted RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 RPS26P11Q5JNZ5 115 aaPredicted RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SAXO2Q658L1 398 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 LIPIQ6XZB0 460 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 VN1R5Q7Z5H4 357 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 CFAP206Q8IYR0 622 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 NATD1Q8N6N6 113 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 HORMAD2Q8N7B1 307 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 CLDN22Q8N7P3 220 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 TCEANCQ8N8B7 351 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 ANKRD53Q8N9V6 530 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 FAM181AQ8N9Y4 354 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 GPR32P1Q8NGA4 272 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 TRMT61AQ96FX7 289 aaKnown RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 TSSK6Q9BXA6 273 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SLC22A4Q9H015 551 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 MARCH7Q9H992 704 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 AHSPQ9NZD4 102 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 SERGEFQ9UGK8 458 aa12.5□□□□□ -0.41
VPS4A-204ENST00000566354 NDRG2Q9UN36 371 aaKnown RBP12.5□□□□□ -0.41
VPS4A-204ENST00000566354 A0A0B4J203 849 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 A0A1W2PQ09 198 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 SEMA7AO75326 666 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 MEF2AQ02078 507 aaPredicted RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 CCINQ13939 588 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 CDK10Q15131 360 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 GLYR1Q49A26 553 aaPredicted RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 SLC25A30Q5SVS4 291 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 SDE2Q6IQ49 451 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 XKRXQ6PP77 449 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 FIP1L1Q6UN15 594 aaKnown RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 DBX2Q6ZNG2 339 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 FAM26EQ8N5C1 309 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 ARL6IP6Q8N6S5 226 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 MAFAQ8NHW3 353 aaPredicted RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 RPLP0P6Q8NHW5 317 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 OR5P2Q8WZ92 322 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 TMEM19Q96HH6 336 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 SLC6A18Q96N87 628 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 TRPM6Q9BX84 2022 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 SPNS1Q9H2V7 528 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 TIGARQ9NQ88 270 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 KCNN3Q9UGI6 736 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 ANKDD1BA6NHY2 528 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 WWP2O00308 870 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 MMP20O60882 483 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 IGFBP1P08833 259 aaPredicted RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 GLULP15104 373 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 DDCP20711 480 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 AZGP1P25311 298 aaKnown RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 ALDH6A1Q02252 535 aaKnown RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 NFE2L1Q14494 772 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 PIP5KL1Q5T9C9 394 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 FAM46CQ5VWP2 391 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 LIPKQ5VXJ0 399 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 PGBD2Q6P3X8 592 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 TNFAIP8L2Q6P589 184 aaPredicted RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 TMIGD1Q6UXZ0 262 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 USP30Q70CQ3 517 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 SLC9B2Q86UD5 537 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 LRRC56Q8IYG6 542 aaPredicted RBP12.49□□□□□ -0.41
VPS4A-204ENST00000566354 NRSN1Q8IZ57 195 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 GDPD1Q8N9F7 314 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 CREB3L4Q8TEY5 395 aa12.49□□□□□ -0.41
VPS4A-204ENST00000566354 SETD7Q8WTS6 366 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms