RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GIMAP4Q9NUV9 329 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 PRODH2Q9UF12 536 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 PLLPQ9Y342 182 aa19.02■□□□□ 0.64
CLN3-219ENST00000565778 BCAS2O75934 225 aaPredicted RBP19.01■□□□□ 0.63
CLN3-219ENST00000565778 CBX7O95931 251 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 SOX18P35713 384 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 DCAF7P61962 342 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 C2orf80Q0P641 193 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 DUSP8Q13202 625 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 GALNT18Q6P9A2 607 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 B3GNT6Q6ZMB0 384 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 FRMD7Q6ZUT3 714 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 NUP54Q7Z3B4 507 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 GDF7Q7Z4P5 450 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 C4orf33Q8N1A6 199 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 CDC26Q8NHZ8 85 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 NEIL3Q8TAT5 605 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 KAT2AQ92830 837 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 GNRHR2Q96P88 292 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 TTYH2Q9BSA4 534 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 SLC6A15Q9H2J7 730 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 METTL7AQ9H8H3 244 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 SLC35C2Q9NQQ7 365 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 OXSMQ9NWU1 459 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 SPRR3Q9UBC9 169 aa19.01■□□□□ 0.63
CLN3-219ENST00000565778 ZNF407Q9C0G0 2248 aa19■□□□□ 0.63
CLN3-219ENST00000565778 WDR1O75083 606 aa19■□□□□ 0.63
CLN3-219ENST00000565778 PPM1BO75688 479 aa19■□□□□ 0.63
CLN3-219ENST00000565778 DRD5P21918 477 aa19■□□□□ 0.63
CLN3-219ENST00000565778 MPIP34949 423 aa19■□□□□ 0.63
CLN3-219ENST00000565778 PPICP45877 212 aa19■□□□□ 0.63
CLN3-219ENST00000565778 GSTM5P46439 218 aa19■□□□□ 0.63
CLN3-219ENST00000565778 EMDP50402 254 aa19■□□□□ 0.63
CLN3-219ENST00000565778 TOMM20Q15388 145 aa19■□□□□ 0.63
CLN3-219ENST00000565778 OMA1Q96E52 524 aa19■□□□□ 0.63
CLN3-219ENST00000565778 C11orf24Q96F05 449 aaPredicted RBP19■□□□□ 0.63
CLN3-219ENST00000565778 BBS4Q96RK4 519 aa19■□□□□ 0.63
CLN3-219ENST00000565778 UCK2Q9BZX2 261 aa19■□□□□ 0.63
CLN3-219ENST00000565778 ANKZF1Q9H8Y5 726 aa19■□□□□ 0.63
CLN3-219ENST00000565778 ANKRA2Q9H9E1 313 aa19■□□□□ 0.63
CLN3-219ENST00000565778 KCNJ16Q9NPI9 418 aa19■□□□□ 0.63
CLN3-219ENST00000565778 RRAGDQ9NQL2 400 aaPredicted RBP19■□□□□ 0.63
CLN3-219ENST00000565778 SIRT5Q9NXA8 310 aa19■□□□□ 0.63
CLN3-219ENST00000565778 FAM90A27PA6NNH2 459 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 ACOX3O15254 700 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 HOXD4P09016 255 aaPredicted RBP18.99■□□□□ 0.63
CLN3-219ENST00000565778 GLI4P10075 376 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 GABRA1P14867 456 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 ENDOUP21128 410 aaKnown RBP18.99■□□□□ 0.63
CLN3-219ENST00000565778 SLC18A2Q05940 514 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 PLCXD2Q0VAA5 305 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 ZNF628Q5EBL2 1059 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 LIPMQ5VYY2 423 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 RTL6Q6ICC9 239 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 TRIM46Q7Z4K8 759 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 OR9A2Q8NGT5 310 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 OR2W6PQ8NHA6 318 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 ZNF675Q8TD23 568 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 SPOCK3Q9BQ16 436 aa18.99■□□□□ 0.63
CLN3-219ENST00000565778 C15orf38-AP3S2A0A0A6YYH1 394 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 NKX2-6A6NCS4 301 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 C2orf72A6NCS6 295 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 GNB5O14775 395 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 REM1O75628 298 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 UROSP10746 265 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 ZNF763Q0D2J5 394 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 ERCC6LQ2NKX8 1250 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 C1orf185Q5T7R7 199 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 DESI1Q6ICB0 168 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 MEX3BQ6ZN04 569 aaKnown RBP18.98■□□□□ 0.63
CLN3-219ENST00000565778 C10orf107Q8IVU9 208 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 OR1J4Q8NGS1 313 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 NODALQ96S42 347 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 IQCGQ9H095 443 aaKnown RBP18.98■□□□□ 0.63
CLN3-219ENST00000565778 ENKD1Q9H0I2 346 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 TNFRSF12AQ9NP84 129 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 EHD3Q9NZN3 535 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 SENP1Q9P0U3 644 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 MID2Q9UJV3 735 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 GPR55Q9Y2T6 319 aaPredicted RBP18.98■□□□□ 0.63
CLN3-219ENST00000565778 POLR3HQ9Y535 204 aaPredicted RBP18.98■□□□□ 0.63
CLN3-219ENST00000565778 FAM215AQ9Y5M1 114 aa18.98■□□□□ 0.63
CLN3-219ENST00000565778 NINQ8N4C6 2090 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 FRG2CA6NGY1 282 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 ICOSLGO75144 302 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 SEC22BO75396 215 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 DDCP20711 480 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 FNDC7Q5VTL7 733 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 TIGD3Q6B0B8 471 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 SLC30A6Q6NXT4 461 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 FAM9CQ8IZT9 166 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 ZNF295-AS1Q8N0V1 137 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 FAM76AQ8TAV0 307 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 HGDQ93099 445 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 ERP27Q96DN0 273 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 TMEM41AQ96HV5 264 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 TRIM8Q9BZR9 551 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 MIEF1Q9NQG6 463 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 DNAJC13O75165 2243 aa18.97■□□□□ 0.63
CLN3-219ENST00000565778 ENO4A6NNW6 628 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms