RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 TAGAPQ8N103 731 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 NKAPQ8N5F7 415 aaKnown RBP9.34□□□□□ -0.91
SF3B3-204ENST00000563739 ZNF611Q8N823 705 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 C17orf47Q8NEP4 570 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 OR1J4Q8NGS1 313 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 RDH11Q8TC12 318 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 TMEM158Q8WZ71 300 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 TANKQ92844 425 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 RIT1Q92963 219 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 MAGOHBQ96A72 148 aaKnown RBP9.34□□□□□ -0.91
SF3B3-204ENST00000563739 MED18Q9BUE0 208 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 REG4Q9BYZ8 158 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 PHACTR1Q9C0D0 580 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 DERL2Q9GZP9 239 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 OR10A5Q9H207 317 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 CAB39LQ9H9S4 337 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.34□□□□□ -0.91
SF3B3-204ENST00000563739 EHD3Q9NZN3 535 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 CTNNAL1Q9UBT7 734 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 ZNF639Q9UID6 485 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 EXO1Q9UQ84 846 aaKnown RBP9.34□□□□□ -0.91
SF3B3-204ENST00000563739 CHMP2BQ9UQN3 213 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 DLGAP4Q9Y2H0 992 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 TEX264Q9Y6I9 313 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 PABPN1LA6NDY0 278 aaKnown RBP9.33□□□□□ -0.92
SF3B3-204ENST00000563739 HS3ST1O14792 307 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 GPRIN2O60269 458 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 STK16O75716 305 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 SMNDC1O75940 238 aaKnown RBP eCLIP9.33□□□□□ -0.92
SF3B3-204ENST00000563739 TTC4O95801 387 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 CBX7O95931 251 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 IGHV4-39P01824 125 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 CRHP06850 196 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 SOD3P08294 240 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 DANCRP0C864 163 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 SLC35E2BP0CK96 405 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 SLC35E2P0CK97 266 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 NR2F6P10588 404 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 CASQ1P31415 396 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 ELK3P41970 407 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 SUCLG1P53597 346 aaKnown RBP9.33□□□□□ -0.92
SF3B3-204ENST00000563739 DIO3P55073 304 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 SIRPAP78324 504 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 GAB1Q13480 694 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 FRG1Q14331 258 aaKnown RBP9.33□□□□□ -0.92
SF3B3-204ENST00000563739 TOMM20Q15388 145 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 AP5B1Q2VPB7 878 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 CCDC137Q6PK04 289 aaKnown RBP9.33□□□□□ -0.92
SF3B3-204ENST00000563739 FAM111BQ6SJ93 734 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 SH2D5Q6ZV89 423 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 ATG4DQ86TL0 474 aaPredicted RBP9.33□□□□□ -0.92
SF3B3-204ENST00000563739 GRAMD2AQ8IUY3 354 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 SNX31Q8N9S9 440 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 ZNF610Q8N9Z0 462 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 HUS1BQ8NHY5 278 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 RAB3IL1Q8TBN0 382 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 UBTD2Q8WUN7 234 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 NEUROG1Q92886 237 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 OMA1Q96E52 524 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 PGM2Q96G03 612 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 RBM18Q96H35 190 aaKnown RBP9.33□□□□□ -0.92
SF3B3-204ENST00000563739 PELOQ9BRX2 385 aaKnown RBP9.33□□□□□ -0.92
SF3B3-204ENST00000563739 RNF122Q9H9V4 155 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 ZNF226Q9NYT6 803 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 PLCE1Q9P212 2302 aa9.33□□□□□ -0.92
SF3B3-204ENST00000563739 ALPK2Q86TB3 2170 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 PRAMEF25A6NGN4 478 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 CLGNO14967 610 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 PHGDHO43175 533 aaKnown RBP9.32□□□□□ -0.92
SF3B3-204ENST00000563739 TLX2O43763 284 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-204ENST00000563739 NME6O75414 186 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-204ENST00000563739 CD8BP10966 210 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 POU2F1P14859 743 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 CHMP24386 653 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 SRD5A2P31213 254 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 ACVR1BP36896 505 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 RPS13P62277 151 aaKnown RBP9.32□□□□□ -0.92
SF3B3-204ENST00000563739 HMGCS1Q01581 520 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 IRF8Q02556 426 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 TGM3Q08188 693 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 VEZF1Q14119 521 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 EXOSC7Q15024 291 aaKnown RBP9.32□□□□□ -0.92
SF3B3-204ENST00000563739 GRHL2Q6ISB3 625 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 SLC30A6Q6NXT4 461 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 STAC2Q6ZMT1 411 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 FRA10AC1Q70Z53 315 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 IFNEQ86WN2 208 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 GALNT12Q8IXK2 581 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 SRFBP1Q8NEF9 429 aaKnown RBP9.32□□□□□ -0.92
SF3B3-204ENST00000563739 OR14L1PQ8NHC6 308 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 KIF18AQ8NI77 898 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 GRK7Q8WTQ7 553 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 TMEM171Q8WVE6 324 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 CAVIN3Q969G5 261 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 CMTM7Q96FZ5 175 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 CFAP36Q96G28 342 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 FAM111AQ96PZ2 611 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 CAPS2Q9BXY5 557 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 RTN4RQ9BZR6 473 aa9.32□□□□□ -0.92
SF3B3-204ENST00000563739 DDX47Q9H0S4 455 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms