RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NT5EP21589 574 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CRHBPP24387 322 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 SOX11P35716 441 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 FEN1P39748 380 aaKnown RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 MC3RP41968 323 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CTSKP43235 329 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CAPZA2P47755 286 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 LIMS1P48059 325 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ALDH3B2P48448 385 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 PRKAG1P54619 331 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 TMBIM6P55061 237 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CDH12P55289 794 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 VSX2P58304 361 aaPredicted RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 YBX1P67809 324 aaKnown RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 POU6F2P78424 691 aaPredicted RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 IGLV3-21P80748 117 aaPredicted RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 IL5RAQ01344 420 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 TRA2AQ13595 282 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS39-204ENST00000561818 TRAM2Q15035 370 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 NR0B2Q15466 257 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 NKG7Q16617 165 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ZNF528Q3MIS6 628 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ZBED5Q49AG3 693 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ZNF628Q5EBL2 1059 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ZNF311Q5JNZ3 666 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 C6orf141Q5SZD1 244 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 PEAR1Q5VY43 1037 aaPredicted RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 MEDAGQ5VYS4 303 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 PMS2CLQ68D20 193 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 C18orf63Q68DL7 685 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CYP4Z2PQ8N1L4 340 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CA13Q8N1Q1 262 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ZNF619Q8N2I2 560 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CLDN22Q8N7P3 220 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 COX18Q8N8Q8 333 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 OR4C15Q8NGM1 316 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 OR9A2Q8NGT5 310 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ZCCHC10Q8TBK6 192 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 RAB2BQ8WUD1 216 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 GAB3Q8WWW8 586 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 HOXB13Q92826 284 aaPredicted RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 CTHRC1Q96CG8 243 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 HS6ST2Q96MM7 605 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 MUS81Q96NY9 551 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 FCRL4Q96PJ5 515 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ALPK1Q96QP1 1244 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 NDC1Q9BTX1 674 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 FOXQ1Q9C009 403 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ZNF350Q9GZX5 532 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 SAP130Q9H0E3 1048 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 IL21RQ9HBE5 538 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CD93Q9NPY3 652 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 PLCXD1Q9NUJ7 323 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 UBAP1Q9NZ09 502 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CNOT2Q9NZN8 540 aaKnown RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 GMPR2Q9P2T1 348 aaKnown RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 LRIT1Q9P2V4 623 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 RSL24D1Q9UHA3 163 aaKnown RBP7.05□□□□□ -1.28
VPS39-204ENST00000561818 ERVK-11Q9UQG0 969 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 PCDHGA8Q9Y5G5 932 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 AK5Q9Y6K8 562 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CCDC160A6NGH7 325 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 OR6C76A6NM76 312 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 POLR1CO15160 346 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 PGRMC2O15173 223 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 KIAA0513O60268 411 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 NME6O75414 186 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 IGF2P01344 180 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TFAP2AP05549 437 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 NUDT7P0C024 238 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 CCNYL3P0C7X3 344 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 OSMP13725 252 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 NID1P14543 1247 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ATP6V1B1P15313 513 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 IL7RP16871 459 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TYRP1P17643 537 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ITIH1P19827 911 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 EPHA8P29322 1005 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 TRHRP34981 398 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 GGT2P36268 569 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 STT3AP46977 705 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 MAN2A2P49641 1150 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TAS2R41P59536 307 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 SHC2P98077 582 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ZXDAP98168 799 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 SLC13A2Q13183 592 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ILKQ13418 452 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 DSG2Q14126 1118 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TIMM50Q3ZCQ8 353 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 IQCCQ4KMZ1 466 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 FGD3Q5JSP0 725 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 FAM219BQ5XKK7 198 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 CASP12Q6UXS9 341 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 B3GNT6Q6ZMB0 384 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 QSOX2Q6ZRP7 698 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 PRSS48Q7RTY5 328 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ZNF550Q7Z398 422 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TRIM73Q86UV7 250 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 GRAMD2AQ8IUY3 354 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 CDK20Q8IZL9 346 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms