RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PRAMEF25A6NGN4 478 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 EMC8O43402 210 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 B3GALT2O43825 422 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 CTSVO60911 334 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 CCDC159P0C7I6 412 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 OR12D1P0DN82 309 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 ACP1P24666 158 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 HMGA2P52926 109 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 MICAQ29983 383 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 AMZ1Q400G9 498 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 MANEAQ5SRI9 462 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 ZNF605Q86T29 641 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 TSPYL5Q86VY4 417 aaPredicted RBP16.71■□□□□ 0.27
SNX1-208ENST00000559844 OOSP2Q86WS3 158 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 DEFB124Q8NES8 71 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 MIPOL1Q8TD10 442 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 PITX2Q99697 317 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 PSD2Q9BQI7 771 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 SPATA5L1Q9BVQ7 753 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 POLR1BQ9H9Y6 1135 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 HRASLS2Q9NWW9 162 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 MS4A12Q9NXJ0 267 aa16.71■□□□□ 0.27
SNX1-208ENST00000559844 NDRG4Q9ULP0 352 aaKnown RBP16.71■□□□□ 0.27
SNX1-208ENST00000559844 SPEGQ15772 3267 aa16.71■□□□□ 0.26
SNX1-208ENST00000559844 WASHC1A8K0Z3 465 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 CASC3O15234 703 aaKnown RBP16.7■□□□□ 0.26
SNX1-208ENST00000559844 ZSCAN9O15535 394 aaPredicted RBP16.7■□□□□ 0.26
SNX1-208ENST00000559844 CPNE6O95741 557 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 NR2F1P10589 423 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 ETS2P15036 469 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 JUNBP17275 347 aaPredicted RBP16.7■□□□□ 0.26
SNX1-208ENST00000559844 CPN2P22792 545 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 TLX1P31314 330 aaPredicted RBP16.7■□□□□ 0.26
SNX1-208ENST00000559844 CRISP3P54108 245 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 NUP107P57740 925 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 NPRL3Q12980 569 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 CDK5R2Q13319 367 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 MAPK11Q15759 364 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 NKAIN2Q5VXU1 208 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 ZFAND2BQ8WV99 257 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 XAGE5Q8WWM1 108 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 AHCYL2Q96HN2 611 aaKnown RBP16.7■□□□□ 0.26
SNX1-208ENST00000559844 BCL2L10Q9HD36 194 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 POFUT2Q9Y2G5 429 aa16.7■□□□□ 0.26
SNX1-208ENST00000559844 IGHV1OR21-1A0A087WYE8 117 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ZNF701M0R085 212 aaPredicted RBP16.69■□□□□ 0.26
SNX1-208ENST00000559844 SLC1A7O00341 560 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 B4GAT1O43505 415 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 GADD45GO95257 159 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 PROS1P07225 676 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 CYP4B1P13584 511 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 FEN1P39748 380 aaKnown RBP16.69■□□□□ 0.26
SNX1-208ENST00000559844 KCNJ5P48544 419 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 CXCR4P61073 352 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 DUSP7Q16829 419 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 EXOC3L2Q2M3D2 409 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ARMC6Q6NXE6 501 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 RNF44Q7L0R7 432 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 LGI4Q8N135 537 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 APOBEC4Q8WW27 367 aaKnown RBP16.69■□□□□ 0.26
SNX1-208ENST00000559844 MAGED4Q96JG8 741 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ZNF354BQ96LW1 612 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ZNF681Q96N22 645 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 SYNDIG1Q9H7V2 258 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 GPC6Q9Y625 555 aaPredicted RBP16.69■□□□□ 0.26
SNX1-208ENST00000559844 CFAP54Q96N23 3096 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ARRDC5A6NEK1 342 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 P2RX6O15547 441 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 C8orf89P0DMQ9 161 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 CAPZBP47756 277 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 PRKAG1P54619 331 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 GPLD1P80108 840 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 TRIP6Q15654 476 aaKnown RBP16.69■□□□□ 0.26
SNX1-208ENST00000559844 CYP27C1Q4G0S4 372 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 CCDC157Q569K6 752 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 PRAMEF8Q5VWM4 474 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 PRAMEF7Q5VXH5 474 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 KLHL35Q6PF15 583 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 TMEM107Q6UX40 140 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ZCCHC10Q8TBK6 192 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 FEVQ99581 238 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 TREX2Q9BQ50 279 aaPredicted RBP16.69■□□□□ 0.26
SNX1-208ENST00000559844 BTBD2Q9BX70 525 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ZNF556Q9HAH1 456 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ACER3Q9NUN7 267 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 SEC14L3Q9UDX4 400 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 ENOPH1Q9UHY7 261 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 CDV3Q9UKY7 258 aaKnown RBP16.69■□□□□ 0.26
SNX1-208ENST00000559844 SNX5Q9Y5X3 404 aa16.69■□□□□ 0.26
SNX1-208ENST00000559844 CNOT1A5YKK6 2376 aaKnown RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 OR5K3A6NET4 321 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 E9PQ18 207 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 DUX1O43812 170 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 CCNB2O95067 398 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 ANGPTL1O95841 491 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 HMGN2P05204 90 aaKnown RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 RPLP0P05388 317 aaKnown RBP16.68■□□□□ 0.26
SNX1-208ENST00000559844 GP1BAP07359 652 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 LIMS1P48059 325 aa16.68■□□□□ 0.26
SNX1-208ENST00000559844 DUSP2Q05923 314 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms