RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 FRG2BQ96QU4 278 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 UCN2Q96RP3 112 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 BRINP2Q9C0B6 783 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 RAB17Q9H0T7 212 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 NXF5Q9H1B4 397 aaKnown RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 NOL11Q9H8H0 719 aaKnown RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 NMRK1Q9NWW6 199 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 KLRF1Q9NZS2 232 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 CPSF2Q9P2I0 782 aaKnown RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 PRODH2Q9UF12 536 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 BCAP29Q9UHQ4 241 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 TMCO1Q9UM00 188 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 EXO1Q9UQ84 846 aaKnown RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 ACANP16112 2415 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 A0A096LPK6 155 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 SH3D21A4FU49 640 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 SNPHO15079 494 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 ABCB7O75027 752 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 BCAS2O75934 225 aaPredicted RBP8.35□□□□□ -1.07
HDDC3-204ENST00000559834 HRGP04196 525 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 ATP1B1P05026 303 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 RBP1P09455 135 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 INHBBP09529 407 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 S1PR1P21453 382 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 DRD5P21918 477 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 GPX3P22352 226 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 PPICP45877 212 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 PLCXD2Q0VAA5 305 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 PRICKLE4Q2TBC4 344 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 SLC48A1Q6P1K1 146 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 AAGABQ6PD74 315 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 CHMP1BQ7LBR1 199 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 MILR1Q7Z6M3 343 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 LUZP2Q86TE4 346 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 CENPLQ8N0S6 344 aaPredicted RBP8.35□□□□□ -1.07
HDDC3-204ENST00000559834 SLC44A1Q8WWI5 657 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 SMPDL3BQ92485 455 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 HGDQ93099 445 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 PIGTQ969N2 578 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 INTS12Q96CB8 462 aaKnown RBP8.35□□□□□ -1.07
HDDC3-204ENST00000559834 OMA1Q96E52 524 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 TUBA1CQ9BQE3 449 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 NTMT1Q9BV86 223 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 FAIM2Q9BWQ8 316 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 OSBPL11Q9BXB4 747 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 ELOVL6Q9H5J4 265 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 SERHLQ9NQF3 203 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 GALNT8Q9NY28 637 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 GRHL1Q9NZI5 618 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 PCDHA9Q9Y5H5 950 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 ZNF780BQ9Y6R6 833 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 ABCA2Q9BZC7 2435 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 NCKAP5O14513 1909 aa8.35□□□□□ -1.07
HDDC3-204ENST00000559834 A0A1W2PS29 197 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 C2orf72A6NCS6 295 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 LRRC14BA6NHZ5 514 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 A8MXE2 369 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 OR7A17O14581 309 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 RAD51CO43502 376 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 ERAL1O75616 437 aaKnown RBP8.34□□□□□ -1.07
HDDC3-204ENST00000559834 REM1O75628 298 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 SIX3O95343 332 aaPredicted RBP8.34□□□□□ -1.07
HDDC3-204ENST00000559834 CRHP06850 196 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 CD53P19397 219 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 KRT20P35900 424 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 FEN1P39748 380 aaKnown RBP8.34□□□□□ -1.07
HDDC3-204ENST00000559834 SLCO1A2P46721 670 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 PCYT1AP49585 367 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 TRA2BP62995 288 aaKnown RBP8.34□□□□□ -1.07
HDDC3-204ENST00000559834 IRF9Q00978 393 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 FOXF2Q12947 444 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 UAP1Q16222 522 aaPredicted RBP8.34□□□□□ -1.07
HDDC3-204ENST00000559834 DCST1Q5T197 706 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 FAM111BQ6SJ93 734 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 CLEC9AQ6UXN8 241 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 ADGRE4PQ86SQ3 457 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 IFNEQ86WN2 208 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 PLCZ1Q86YW0 608 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 P3H2Q8IVL5 708 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 METTL4Q8N3J2 472 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 WDSUB1Q8N9V3 476 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 ADCY4Q8NFM4 1077 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 RDH11Q8TC12 318 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 FBXO25Q8TCJ0 367 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 MRRFQ96E11 262 aaKnown RBP8.34□□□□□ -1.07
HDDC3-204ENST00000559834 PHF21BQ96EK2 531 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 COL21A1Q96P44 957 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 GPR78Q96P69 363 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 CDK15Q96Q40 435 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 NODALQ96S42 347 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 LRRC1Q9BTT6 524 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 ITPAQ9BY32 194 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 MRPL1Q9BYD6 325 aaKnown RBP8.34□□□□□ -1.07
HDDC3-204ENST00000559834 OR2B2Q9GZK3 357 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 VPS11Q9H270 941 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 KCNF1Q9H3M0 494 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 ZNF395Q9H8N7 513 aaPredicted RBP8.34□□□□□ -1.07
HDDC3-204ENST00000559834 ZNF226Q9NYT6 803 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 TAS2R10Q9NYW0 307 aa8.34□□□□□ -1.07
HDDC3-204ENST00000559834 ZNF639Q9UID6 485 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms